Strain Fitness in Escherichia coli ECRC101 around MCAODC_26085

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMCAODC_26075 and glmS are separated by 547 nucleotidesglmS and glmL overlap by 1 nucleotidesglmL and glmE are separated by 18 nucleotides MCAODC_26075: MCAODC_26075 - hypothetical protein, at 1,926,665 to 1,927,087 _26075 MCAODC_26080: glmS - methylaspartate mutase subunit S, at 1,927,635 to 1,928,084 glmS MCAODC_26085: glmL - methylaspartate mutase accessory protein GlmL, at 1,928,084 to 1,929,472 glmL MCAODC_26090: glmE - methylaspartate mutase subunit E, at 1,929,491 to 1,930,936 glmE Position (kb) 1928 1929 1930Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1927.273 kb on - strandat 1927.554 kb on + strandat 1927.621 kb on - strandat 1927.770 kb on + strand, within glmSat 1927.770 kb on + strand, within glmSat 1927.770 kb on + strand, within glmSat 1927.770 kb on + strand, within glmSat 1927.771 kb on - strand, within glmSat 1927.773 kb on - strand, within glmSat 1927.773 kb on - strand, within glmSat 1927.820 kb on + strand, within glmSat 1927.824 kb on + strand, within glmSat 1927.825 kb on - strand, within glmSat 1927.899 kb on + strand, within glmSat 1927.900 kb on - strand, within glmSat 1928.002 kb on + strand, within glmSat 1928.002 kb on + strand, within glmSat 1928.002 kb on + strand, within glmSat 1928.003 kb on - strand, within glmSat 1928.033 kb on + strand, within glmSat 1928.058 kb on - strandat 1928.063 kb on + strandat 1928.079 kb on - strandat 1928.079 kb on - strandat 1928.176 kb on - strandat 1928.238 kb on + strand, within glmLat 1928.244 kb on + strand, within glmLat 1928.244 kb on + strand, within glmLat 1928.245 kb on - strand, within glmLat 1928.245 kb on - strand, within glmLat 1928.245 kb on - strand, within glmLat 1928.248 kb on + strand, within glmLat 1928.248 kb on + strand, within glmLat 1928.248 kb on + strand, within glmLat 1928.248 kb on + strand, within glmLat 1928.249 kb on - strand, within glmLat 1928.292 kb on - strand, within glmLat 1928.347 kb on + strand, within glmLat 1928.348 kb on - strand, within glmLat 1928.348 kb on - strand, within glmLat 1928.348 kb on - strand, within glmLat 1928.348 kb on - strand, within glmLat 1928.348 kb on - strand, within glmLat 1928.348 kb on - strand, within glmLat 1928.409 kb on - strand, within glmLat 1928.415 kb on - strand, within glmLat 1928.560 kb on + strand, within glmLat 1928.560 kb on + strand, within glmLat 1928.561 kb on - strand, within glmLat 1928.561 kb on - strand, within glmLat 1928.564 kb on + strand, within glmLat 1928.581 kb on + strand, within glmLat 1928.686 kb on + strand, within glmLat 1928.687 kb on - strand, within glmLat 1928.697 kb on + strand, within glmLat 1928.698 kb on - strand, within glmLat 1928.717 kb on - strand, within glmLat 1928.746 kb on + strand, within glmLat 1928.874 kb on - strand, within glmLat 1928.914 kb on - strand, within glmLat 1929.062 kb on + strand, within glmLat 1929.062 kb on + strand, within glmLat 1929.075 kb on + strand, within glmLat 1929.075 kb on + strand, within glmLat 1929.076 kb on - strand, within glmLat 1929.092 kb on + strand, within glmLat 1929.093 kb on - strand, within glmLat 1929.096 kb on + strand, within glmLat 1929.096 kb on + strand, within glmLat 1929.156 kb on - strand, within glmLat 1929.251 kb on - strand, within glmLat 1929.317 kb on + strand, within glmLat 1929.328 kb on - strand, within glmLat 1929.375 kb on - strandat 1929.393 kb on + strandat 1929.394 kb on - strandat 1929.397 kb on - strandat 1929.451 kb on + strandat 1929.451 kb on + strandat 1929.452 kb on - strandat 1929.462 kb on + strandat 1929.468 kb on + strandat 1929.477 kb on + strandat 1929.478 kb on - strandat 1929.602 kb on - strandat 1929.605 kb on + strandat 1929.670 kb on + strand, within glmEat 1929.671 kb on - strand, within glmEat 1929.738 kb on + strand, within glmEat 1929.739 kb on - strand, within glmEat 1929.779 kb on + strand, within glmEat 1929.779 kb on + strand, within glmEat 1929.780 kb on - strand, within glmEat 1929.780 kb on - strand, within glmEat 1929.781 kb on + strand, within glmEat 1929.781 kb on + strand, within glmEat 1929.781 kb on + strand, within glmEat 1929.781 kb on + strand, within glmEat 1929.781 kb on + strand, within glmEat 1929.781 kb on + strand, within glmEat 1929.782 kb on - strand, within glmEat 1929.814 kb on - strand, within glmEat 1929.821 kb on - strand, within glmEat 1929.871 kb on + strand, within glmEat 1929.872 kb on - strand, within glmEat 1929.872 kb on - strand, within glmEat 1929.872 kb on - strand, within glmEat 1929.872 kb on - strand, within glmEat 1929.872 kb on - strand, within glmEat 1930.016 kb on + strand, within glmEat 1930.017 kb on - strand, within glmEat 1930.097 kb on + strand, within glmEat 1930.097 kb on + strand, within glmEat 1930.097 kb on + strand, within glmEat 1930.097 kb on + strand, within glmEat 1930.097 kb on + strand, within glmEat 1930.097 kb on + strand, within glmEat 1930.097 kb on + strand, within glmEat 1930.098 kb on - strand, within glmEat 1930.098 kb on - strand, within glmEat 1930.169 kb on - strand, within glmEat 1930.322 kb on + strand, within glmEat 1930.322 kb on + strand, within glmEat 1930.322 kb on + strand, within glmEat 1930.322 kb on + strand, within glmEat 1930.322 kb on + strand, within glmEat 1930.322 kb on + strand, within glmEat 1930.322 kb on + strand, within glmEat 1930.322 kb on + strand, within glmEat 1930.322 kb on + strand, within glmEat 1930.322 kb on + strand, within glmEat 1930.322 kb on + strand, within glmEat 1930.322 kb on + strand, within glmEat 1930.323 kb on - strand, within glmEat 1930.328 kb on + strand, within glmEat 1930.405 kb on + strand, within glmEat 1930.408 kb on + strand, within glmEat 1930.408 kb on + strand, within glmE

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
1,927,273 - +0.5
1,927,554 + +0.3
1,927,621 - -0.9
1,927,770 + glmS MCAODC_26080 0.30 +0.9
1,927,770 + glmS MCAODC_26080 0.30 -1.2
1,927,770 + glmS MCAODC_26080 0.30 -0.8
1,927,770 + glmS MCAODC_26080 0.30 -0.5
1,927,771 - glmS MCAODC_26080 0.30 +0.4
1,927,773 - glmS MCAODC_26080 0.31 +2.4
1,927,773 - glmS MCAODC_26080 0.31 -2.3
1,927,820 + glmS MCAODC_26080 0.41 -0.5
1,927,824 + glmS MCAODC_26080 0.42 -0.5
1,927,825 - glmS MCAODC_26080 0.42 +0.5
1,927,899 + glmS MCAODC_26080 0.59 -1.8
1,927,900 - glmS MCAODC_26080 0.59 +0.1
1,928,002 + glmS MCAODC_26080 0.82 -1.1
1,928,002 + glmS MCAODC_26080 0.82 -0.1
1,928,002 + glmS MCAODC_26080 0.82 -2.5
1,928,003 - glmS MCAODC_26080 0.82 -0.5
1,928,033 + glmS MCAODC_26080 0.88 +0.5
1,928,058 - +2.2
1,928,063 + +0.9
1,928,079 - +0.1
1,928,079 - +1.0
1,928,176 - +1.8
1,928,238 + glmL MCAODC_26085 0.11 +0.4
1,928,244 + glmL MCAODC_26085 0.12 +0.9
1,928,244 + glmL MCAODC_26085 0.12 +0.3
1,928,245 - glmL MCAODC_26085 0.12 +1.1
1,928,245 - glmL MCAODC_26085 0.12 -0.4
1,928,245 - glmL MCAODC_26085 0.12 +0.4
1,928,248 + glmL MCAODC_26085 0.12 -0.3
1,928,248 + glmL MCAODC_26085 0.12 +0.0
1,928,248 + glmL MCAODC_26085 0.12 -1.4
1,928,248 + glmL MCAODC_26085 0.12 -1.2
1,928,249 - glmL MCAODC_26085 0.12 -0.3
1,928,292 - glmL MCAODC_26085 0.15 +1.5
1,928,347 + glmL MCAODC_26085 0.19 -1.1
1,928,348 - glmL MCAODC_26085 0.19 -1.4
1,928,348 - glmL MCAODC_26085 0.19 -0.0
1,928,348 - glmL MCAODC_26085 0.19 +0.8
1,928,348 - glmL MCAODC_26085 0.19 -2.1
1,928,348 - glmL MCAODC_26085 0.19 +0.7
1,928,348 - glmL MCAODC_26085 0.19 +1.7
1,928,409 - glmL MCAODC_26085 0.23 +1.1
1,928,415 - glmL MCAODC_26085 0.24 -0.1
1,928,560 + glmL MCAODC_26085 0.34 +1.1
1,928,560 + glmL MCAODC_26085 0.34 +0.9
1,928,561 - glmL MCAODC_26085 0.34 +0.6
1,928,561 - glmL MCAODC_26085 0.34 +0.1
1,928,564 + glmL MCAODC_26085 0.35 +0.2
1,928,581 + glmL MCAODC_26085 0.36 +0.1
1,928,686 + glmL MCAODC_26085 0.43 -0.2
1,928,687 - glmL MCAODC_26085 0.43 +0.6
1,928,697 + glmL MCAODC_26085 0.44 +0.4
1,928,698 - glmL MCAODC_26085 0.44 -0.3
1,928,717 - glmL MCAODC_26085 0.46 -2.1
1,928,746 + glmL MCAODC_26085 0.48 +1.6
1,928,874 - glmL MCAODC_26085 0.57 +0.2
1,928,914 - glmL MCAODC_26085 0.60 +0.8
1,929,062 + glmL MCAODC_26085 0.70 +0.9
1,929,062 + glmL MCAODC_26085 0.70 +1.2
1,929,075 + glmL MCAODC_26085 0.71 +1.0
1,929,075 + glmL MCAODC_26085 0.71 -1.7
1,929,076 - glmL MCAODC_26085 0.71 -3.7
1,929,092 + glmL MCAODC_26085 0.73 +0.9
1,929,093 - glmL MCAODC_26085 0.73 +0.8
1,929,096 + glmL MCAODC_26085 0.73 +1.4
1,929,096 + glmL MCAODC_26085 0.73 +0.1
1,929,156 - glmL MCAODC_26085 0.77 +0.3
1,929,251 - glmL MCAODC_26085 0.84 +0.3
1,929,317 + glmL MCAODC_26085 0.89 -0.2
1,929,328 - glmL MCAODC_26085 0.90 -3.5
1,929,375 - +1.1
1,929,393 + +0.1
1,929,394 - -1.2
1,929,397 - -1.7
1,929,451 + -3.5
1,929,451 + -1.0
1,929,452 - -2.2
1,929,462 + +1.3
1,929,468 + +0.7
1,929,477 + +0.0
1,929,478 - +0.2
1,929,602 - -0.6
1,929,605 + -2.5
1,929,670 + glmE MCAODC_26090 0.12 +0.2
1,929,671 - glmE MCAODC_26090 0.12 -1.0
1,929,738 + glmE MCAODC_26090 0.17 +1.6
1,929,739 - glmE MCAODC_26090 0.17 -2.8
1,929,779 + glmE MCAODC_26090 0.20 -1.5
1,929,779 + glmE MCAODC_26090 0.20 -0.5
1,929,780 - glmE MCAODC_26090 0.20 +1.2
1,929,780 - glmE MCAODC_26090 0.20 +0.4
1,929,781 + glmE MCAODC_26090 0.20 -2.6
1,929,781 + glmE MCAODC_26090 0.20 +0.4
1,929,781 + glmE MCAODC_26090 0.20 +0.3
1,929,781 + glmE MCAODC_26090 0.20 -0.1
1,929,781 + glmE MCAODC_26090 0.20 -0.0
1,929,781 + glmE MCAODC_26090 0.20 -0.8
1,929,782 - glmE MCAODC_26090 0.20 +1.0
1,929,814 - glmE MCAODC_26090 0.22 +0.6
1,929,821 - glmE MCAODC_26090 0.23 +0.8
1,929,871 + glmE MCAODC_26090 0.26 -0.5
1,929,872 - glmE MCAODC_26090 0.26 +1.5
1,929,872 - glmE MCAODC_26090 0.26 -3.7
1,929,872 - glmE MCAODC_26090 0.26 +0.3
1,929,872 - glmE MCAODC_26090 0.26 +1.1
1,929,872 - glmE MCAODC_26090 0.26 -3.1
1,930,016 + glmE MCAODC_26090 0.36 -0.9
1,930,017 - glmE MCAODC_26090 0.36 +0.8
1,930,097 + glmE MCAODC_26090 0.42 +1.0
1,930,097 + glmE MCAODC_26090 0.42 +1.1
1,930,097 + glmE MCAODC_26090 0.42 -4.2
1,930,097 + glmE MCAODC_26090 0.42 +0.7
1,930,097 + glmE MCAODC_26090 0.42 +1.5
1,930,097 + glmE MCAODC_26090 0.42 -0.0
1,930,097 + glmE MCAODC_26090 0.42 -0.3
1,930,098 - glmE MCAODC_26090 0.42 +1.2
1,930,098 - glmE MCAODC_26090 0.42 -1.0
1,930,169 - glmE MCAODC_26090 0.47 +0.7
1,930,322 + glmE MCAODC_26090 0.57 -0.2
1,930,322 + glmE MCAODC_26090 0.57 +0.5
1,930,322 + glmE MCAODC_26090 0.57 +0.6
1,930,322 + glmE MCAODC_26090 0.57 -3.0
1,930,322 + glmE MCAODC_26090 0.57 +0.9
1,930,322 + glmE MCAODC_26090 0.57 -0.3
1,930,322 + glmE MCAODC_26090 0.57 +0.2
1,930,322 + glmE MCAODC_26090 0.57 -0.4
1,930,322 + glmE MCAODC_26090 0.57 +1.3
1,930,322 + glmE MCAODC_26090 0.57 +2.3
1,930,322 + glmE MCAODC_26090 0.57 -2.9
1,930,322 + glmE MCAODC_26090 0.57 -2.4
1,930,323 - glmE MCAODC_26090 0.58 +0.6
1,930,328 + glmE MCAODC_26090 0.58 -2.0
1,930,405 + glmE MCAODC_26090 0.63 +1.4
1,930,408 + glmE MCAODC_26090 0.63 +0.4
1,930,408 + glmE MCAODC_26090 0.63 -0.9

Or see this region's nucleotide sequence