Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_26075 and glmS are separated by 547 nucleotides glmS and glmL overlap by 1 nucleotides glmL and glmE are separated by 18 nucleotides
MCAODC_26075: MCAODC_26075 - hypothetical protein, at 1,926,665 to 1,927,087
_26075
MCAODC_26080: glmS - methylaspartate mutase subunit S, at 1,927,635 to 1,928,084
glmS
MCAODC_26085: glmL - methylaspartate mutase accessory protein GlmL, at 1,928,084 to 1,929,472
glmL
MCAODC_26090: glmE - methylaspartate mutase subunit E, at 1,929,491 to 1,930,936
glmE
Position (kb)
1928
1929
1930 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1927.273 kb on - strand at 1927.554 kb on + strand at 1927.621 kb on - strand at 1927.770 kb on + strand, within glmS at 1927.770 kb on + strand, within glmS at 1927.770 kb on + strand, within glmS at 1927.770 kb on + strand, within glmS at 1927.771 kb on - strand, within glmS at 1927.773 kb on - strand, within glmS at 1927.773 kb on - strand, within glmS at 1927.820 kb on + strand, within glmS at 1927.824 kb on + strand, within glmS at 1927.825 kb on - strand, within glmS at 1927.899 kb on + strand, within glmS at 1927.900 kb on - strand, within glmS at 1928.002 kb on + strand, within glmS at 1928.002 kb on + strand, within glmS at 1928.002 kb on + strand, within glmS at 1928.003 kb on - strand, within glmS at 1928.033 kb on + strand, within glmS at 1928.058 kb on - strand at 1928.063 kb on + strand at 1928.079 kb on - strand at 1928.079 kb on - strand at 1928.176 kb on - strand at 1928.238 kb on + strand, within glmL at 1928.244 kb on + strand, within glmL at 1928.244 kb on + strand, within glmL at 1928.245 kb on - strand, within glmL at 1928.245 kb on - strand, within glmL at 1928.245 kb on - strand, within glmL at 1928.248 kb on + strand, within glmL at 1928.248 kb on + strand, within glmL at 1928.248 kb on + strand, within glmL at 1928.248 kb on + strand, within glmL at 1928.249 kb on - strand, within glmL at 1928.292 kb on - strand, within glmL at 1928.347 kb on + strand, within glmL at 1928.348 kb on - strand, within glmL at 1928.348 kb on - strand, within glmL at 1928.348 kb on - strand, within glmL at 1928.348 kb on - strand, within glmL at 1928.348 kb on - strand, within glmL at 1928.348 kb on - strand, within glmL at 1928.409 kb on - strand, within glmL at 1928.415 kb on - strand, within glmL at 1928.560 kb on + strand, within glmL at 1928.560 kb on + strand, within glmL at 1928.561 kb on - strand, within glmL at 1928.561 kb on - strand, within glmL at 1928.564 kb on + strand, within glmL at 1928.581 kb on + strand, within glmL at 1928.686 kb on + strand, within glmL at 1928.687 kb on - strand, within glmL at 1928.697 kb on + strand, within glmL at 1928.698 kb on - strand, within glmL at 1928.717 kb on - strand, within glmL at 1928.746 kb on + strand, within glmL at 1928.874 kb on - strand, within glmL at 1928.914 kb on - strand, within glmL at 1929.062 kb on + strand, within glmL at 1929.062 kb on + strand, within glmL at 1929.075 kb on + strand, within glmL at 1929.075 kb on + strand, within glmL at 1929.076 kb on - strand, within glmL at 1929.092 kb on + strand, within glmL at 1929.093 kb on - strand, within glmL at 1929.096 kb on + strand, within glmL at 1929.096 kb on + strand, within glmL at 1929.156 kb on - strand, within glmL at 1929.251 kb on - strand, within glmL at 1929.317 kb on + strand, within glmL at 1929.328 kb on - strand, within glmL at 1929.375 kb on - strand at 1929.393 kb on + strand at 1929.394 kb on - strand at 1929.397 kb on - strand at 1929.451 kb on + strand at 1929.451 kb on + strand at 1929.452 kb on - strand at 1929.462 kb on + strand at 1929.468 kb on + strand at 1929.477 kb on + strand at 1929.478 kb on - strand at 1929.602 kb on - strand at 1929.605 kb on + strand at 1929.670 kb on + strand, within glmE at 1929.671 kb on - strand, within glmE at 1929.738 kb on + strand, within glmE at 1929.739 kb on - strand, within glmE at 1929.779 kb on + strand, within glmE at 1929.779 kb on + strand, within glmE at 1929.780 kb on - strand, within glmE at 1929.780 kb on - strand, within glmE at 1929.781 kb on + strand, within glmE at 1929.781 kb on + strand, within glmE at 1929.781 kb on + strand, within glmE at 1929.781 kb on + strand, within glmE at 1929.781 kb on + strand, within glmE at 1929.781 kb on + strand, within glmE at 1929.782 kb on - strand, within glmE at 1929.814 kb on - strand, within glmE at 1929.821 kb on - strand, within glmE at 1929.871 kb on + strand, within glmE at 1929.872 kb on - strand, within glmE at 1929.872 kb on - strand, within glmE at 1929.872 kb on - strand, within glmE at 1929.872 kb on - strand, within glmE at 1929.872 kb on - strand, within glmE at 1930.016 kb on + strand, within glmE at 1930.017 kb on - strand, within glmE at 1930.097 kb on + strand, within glmE at 1930.097 kb on + strand, within glmE at 1930.097 kb on + strand, within glmE at 1930.097 kb on + strand, within glmE at 1930.097 kb on + strand, within glmE at 1930.097 kb on + strand, within glmE at 1930.097 kb on + strand, within glmE at 1930.098 kb on - strand, within glmE at 1930.098 kb on - strand, within glmE at 1930.169 kb on - strand, within glmE at 1930.322 kb on + strand, within glmE at 1930.322 kb on + strand, within glmE at 1930.322 kb on + strand, within glmE at 1930.322 kb on + strand, within glmE at 1930.322 kb on + strand, within glmE at 1930.322 kb on + strand, within glmE at 1930.322 kb on + strand, within glmE at 1930.322 kb on + strand, within glmE at 1930.322 kb on + strand, within glmE at 1930.322 kb on + strand, within glmE at 1930.322 kb on + strand, within glmE at 1930.322 kb on + strand, within glmE at 1930.323 kb on - strand, within glmE at 1930.328 kb on + strand, within glmE at 1930.405 kb on + strand, within glmE at 1930.408 kb on + strand, within glmE at 1930.408 kb on + strand, within glmE
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,927,273 - +0.5 1,927,554 + +0.3 1,927,621 - -0.9 1,927,770 + glmS MCAODC_26080 0.30 +0.9 1,927,770 + glmS MCAODC_26080 0.30 -1.2 1,927,770 + glmS MCAODC_26080 0.30 -0.8 1,927,770 + glmS MCAODC_26080 0.30 -0.5 1,927,771 - glmS MCAODC_26080 0.30 +0.4 1,927,773 - glmS MCAODC_26080 0.31 +2.4 1,927,773 - glmS MCAODC_26080 0.31 -2.3 1,927,820 + glmS MCAODC_26080 0.41 -0.5 1,927,824 + glmS MCAODC_26080 0.42 -0.5 1,927,825 - glmS MCAODC_26080 0.42 +0.5 1,927,899 + glmS MCAODC_26080 0.59 -1.8 1,927,900 - glmS MCAODC_26080 0.59 +0.1 1,928,002 + glmS MCAODC_26080 0.82 -1.1 1,928,002 + glmS MCAODC_26080 0.82 -0.1 1,928,002 + glmS MCAODC_26080 0.82 -2.5 1,928,003 - glmS MCAODC_26080 0.82 -0.5 1,928,033 + glmS MCAODC_26080 0.88 +0.5 1,928,058 - +2.2 1,928,063 + +0.9 1,928,079 - +0.1 1,928,079 - +1.0 1,928,176 - +1.8 1,928,238 + glmL MCAODC_26085 0.11 +0.4 1,928,244 + glmL MCAODC_26085 0.12 +0.9 1,928,244 + glmL MCAODC_26085 0.12 +0.3 1,928,245 - glmL MCAODC_26085 0.12 +1.1 1,928,245 - glmL MCAODC_26085 0.12 -0.4 1,928,245 - glmL MCAODC_26085 0.12 +0.4 1,928,248 + glmL MCAODC_26085 0.12 -0.3 1,928,248 + glmL MCAODC_26085 0.12 +0.0 1,928,248 + glmL MCAODC_26085 0.12 -1.4 1,928,248 + glmL MCAODC_26085 0.12 -1.2 1,928,249 - glmL MCAODC_26085 0.12 -0.3 1,928,292 - glmL MCAODC_26085 0.15 +1.5 1,928,347 + glmL MCAODC_26085 0.19 -1.1 1,928,348 - glmL MCAODC_26085 0.19 -1.4 1,928,348 - glmL MCAODC_26085 0.19 -0.0 1,928,348 - glmL MCAODC_26085 0.19 +0.8 1,928,348 - glmL MCAODC_26085 0.19 -2.1 1,928,348 - glmL MCAODC_26085 0.19 +0.7 1,928,348 - glmL MCAODC_26085 0.19 +1.7 1,928,409 - glmL MCAODC_26085 0.23 +1.1 1,928,415 - glmL MCAODC_26085 0.24 -0.1 1,928,560 + glmL MCAODC_26085 0.34 +1.1 1,928,560 + glmL MCAODC_26085 0.34 +0.9 1,928,561 - glmL MCAODC_26085 0.34 +0.6 1,928,561 - glmL MCAODC_26085 0.34 +0.1 1,928,564 + glmL MCAODC_26085 0.35 +0.2 1,928,581 + glmL MCAODC_26085 0.36 +0.1 1,928,686 + glmL MCAODC_26085 0.43 -0.2 1,928,687 - glmL MCAODC_26085 0.43 +0.6 1,928,697 + glmL MCAODC_26085 0.44 +0.4 1,928,698 - glmL MCAODC_26085 0.44 -0.3 1,928,717 - glmL MCAODC_26085 0.46 -2.1 1,928,746 + glmL MCAODC_26085 0.48 +1.6 1,928,874 - glmL MCAODC_26085 0.57 +0.2 1,928,914 - glmL MCAODC_26085 0.60 +0.8 1,929,062 + glmL MCAODC_26085 0.70 +0.9 1,929,062 + glmL MCAODC_26085 0.70 +1.2 1,929,075 + glmL MCAODC_26085 0.71 +1.0 1,929,075 + glmL MCAODC_26085 0.71 -1.7 1,929,076 - glmL MCAODC_26085 0.71 -3.7 1,929,092 + glmL MCAODC_26085 0.73 +0.9 1,929,093 - glmL MCAODC_26085 0.73 +0.8 1,929,096 + glmL MCAODC_26085 0.73 +1.4 1,929,096 + glmL MCAODC_26085 0.73 +0.1 1,929,156 - glmL MCAODC_26085 0.77 +0.3 1,929,251 - glmL MCAODC_26085 0.84 +0.3 1,929,317 + glmL MCAODC_26085 0.89 -0.2 1,929,328 - glmL MCAODC_26085 0.90 -3.5 1,929,375 - +1.1 1,929,393 + +0.1 1,929,394 - -1.2 1,929,397 - -1.7 1,929,451 + -3.5 1,929,451 + -1.0 1,929,452 - -2.2 1,929,462 + +1.3 1,929,468 + +0.7 1,929,477 + +0.0 1,929,478 - +0.2 1,929,602 - -0.6 1,929,605 + -2.5 1,929,670 + glmE MCAODC_26090 0.12 +0.2 1,929,671 - glmE MCAODC_26090 0.12 -1.0 1,929,738 + glmE MCAODC_26090 0.17 +1.6 1,929,739 - glmE MCAODC_26090 0.17 -2.8 1,929,779 + glmE MCAODC_26090 0.20 -1.5 1,929,779 + glmE MCAODC_26090 0.20 -0.5 1,929,780 - glmE MCAODC_26090 0.20 +1.2 1,929,780 - glmE MCAODC_26090 0.20 +0.4 1,929,781 + glmE MCAODC_26090 0.20 -2.6 1,929,781 + glmE MCAODC_26090 0.20 +0.4 1,929,781 + glmE MCAODC_26090 0.20 +0.3 1,929,781 + glmE MCAODC_26090 0.20 -0.1 1,929,781 + glmE MCAODC_26090 0.20 -0.0 1,929,781 + glmE MCAODC_26090 0.20 -0.8 1,929,782 - glmE MCAODC_26090 0.20 +1.0 1,929,814 - glmE MCAODC_26090 0.22 +0.6 1,929,821 - glmE MCAODC_26090 0.23 +0.8 1,929,871 + glmE MCAODC_26090 0.26 -0.5 1,929,872 - glmE MCAODC_26090 0.26 +1.5 1,929,872 - glmE MCAODC_26090 0.26 -3.7 1,929,872 - glmE MCAODC_26090 0.26 +0.3 1,929,872 - glmE MCAODC_26090 0.26 +1.1 1,929,872 - glmE MCAODC_26090 0.26 -3.1 1,930,016 + glmE MCAODC_26090 0.36 -0.9 1,930,017 - glmE MCAODC_26090 0.36 +0.8 1,930,097 + glmE MCAODC_26090 0.42 +1.0 1,930,097 + glmE MCAODC_26090 0.42 +1.1 1,930,097 + glmE MCAODC_26090 0.42 -4.2 1,930,097 + glmE MCAODC_26090 0.42 +0.7 1,930,097 + glmE MCAODC_26090 0.42 +1.5 1,930,097 + glmE MCAODC_26090 0.42 -0.0 1,930,097 + glmE MCAODC_26090 0.42 -0.3 1,930,098 - glmE MCAODC_26090 0.42 +1.2 1,930,098 - glmE MCAODC_26090 0.42 -1.0 1,930,169 - glmE MCAODC_26090 0.47 +0.7 1,930,322 + glmE MCAODC_26090 0.57 -0.2 1,930,322 + glmE MCAODC_26090 0.57 +0.5 1,930,322 + glmE MCAODC_26090 0.57 +0.6 1,930,322 + glmE MCAODC_26090 0.57 -3.0 1,930,322 + glmE MCAODC_26090 0.57 +0.9 1,930,322 + glmE MCAODC_26090 0.57 -0.3 1,930,322 + glmE MCAODC_26090 0.57 +0.2 1,930,322 + glmE MCAODC_26090 0.57 -0.4 1,930,322 + glmE MCAODC_26090 0.57 +1.3 1,930,322 + glmE MCAODC_26090 0.57 +2.3 1,930,322 + glmE MCAODC_26090 0.57 -2.9 1,930,322 + glmE MCAODC_26090 0.57 -2.4 1,930,323 - glmE MCAODC_26090 0.58 +0.6 1,930,328 + glmE MCAODC_26090 0.58 -2.0 1,930,405 + glmE MCAODC_26090 0.63 +1.4 1,930,408 + glmE MCAODC_26090 0.63 +0.4 1,930,408 + glmE MCAODC_26090 0.63 -0.9
Or see this region's nucleotide sequence