Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_26075 and glmS are separated by 547 nucleotides glmS and glmL overlap by 1 nucleotides
MCAODC_26075: MCAODC_26075 - hypothetical protein, at 1,926,665 to 1,927,087
_26075
MCAODC_26080: glmS - methylaspartate mutase subunit S, at 1,927,635 to 1,928,084
glmS
MCAODC_26085: glmL - methylaspartate mutase accessory protein GlmL, at 1,928,084 to 1,929,472
glmL
Position (kb)
1927
1928
1929 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1926.713 kb on + strand, within MCAODC_26075 at 1926.714 kb on - strand, within MCAODC_26075 at 1926.820 kb on - strand, within MCAODC_26075 at 1926.920 kb on - strand, within MCAODC_26075 at 1927.078 kb on + strand at 1927.273 kb on - strand at 1927.554 kb on + strand at 1927.621 kb on - strand at 1927.770 kb on + strand, within glmS at 1927.770 kb on + strand, within glmS at 1927.770 kb on + strand, within glmS at 1927.770 kb on + strand, within glmS at 1927.771 kb on - strand, within glmS at 1927.773 kb on - strand, within glmS at 1927.773 kb on - strand, within glmS at 1927.820 kb on + strand, within glmS at 1927.824 kb on + strand, within glmS at 1927.825 kb on - strand, within glmS at 1927.899 kb on + strand, within glmS at 1927.900 kb on - strand, within glmS at 1928.002 kb on + strand, within glmS at 1928.002 kb on + strand, within glmS at 1928.002 kb on + strand, within glmS at 1928.003 kb on - strand, within glmS at 1928.033 kb on + strand, within glmS at 1928.058 kb on - strand at 1928.063 kb on + strand at 1928.079 kb on - strand at 1928.079 kb on - strand at 1928.176 kb on - strand at 1928.238 kb on + strand, within glmL at 1928.244 kb on + strand, within glmL at 1928.244 kb on + strand, within glmL at 1928.245 kb on - strand, within glmL at 1928.245 kb on - strand, within glmL at 1928.245 kb on - strand, within glmL at 1928.248 kb on + strand, within glmL at 1928.248 kb on + strand, within glmL at 1928.248 kb on + strand, within glmL at 1928.248 kb on + strand, within glmL at 1928.249 kb on - strand, within glmL at 1928.292 kb on - strand, within glmL at 1928.347 kb on + strand, within glmL at 1928.348 kb on - strand, within glmL at 1928.348 kb on - strand, within glmL at 1928.348 kb on - strand, within glmL at 1928.348 kb on - strand, within glmL at 1928.348 kb on - strand, within glmL at 1928.348 kb on - strand, within glmL at 1928.409 kb on - strand, within glmL at 1928.415 kb on - strand, within glmL at 1928.560 kb on + strand, within glmL at 1928.560 kb on + strand, within glmL at 1928.561 kb on - strand, within glmL at 1928.561 kb on - strand, within glmL at 1928.564 kb on + strand, within glmL at 1928.581 kb on + strand, within glmL at 1928.686 kb on + strand, within glmL at 1928.687 kb on - strand, within glmL at 1928.697 kb on + strand, within glmL at 1928.698 kb on - strand, within glmL at 1928.717 kb on - strand, within glmL at 1928.746 kb on + strand, within glmL at 1928.874 kb on - strand, within glmL at 1928.914 kb on - strand, within glmL at 1929.062 kb on + strand, within glmL at 1929.062 kb on + strand, within glmL at 1929.075 kb on + strand, within glmL at 1929.075 kb on + strand, within glmL at 1929.076 kb on - strand, within glmL
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,926,713 + MCAODC_26075 0.11 -0.0 1,926,714 - MCAODC_26075 0.12 +0.9 1,926,820 - MCAODC_26075 0.37 +1.5 1,926,920 - MCAODC_26075 0.60 +0.7 1,927,078 + +0.3 1,927,273 - +0.5 1,927,554 + +0.3 1,927,621 - -0.9 1,927,770 + glmS MCAODC_26080 0.30 +0.9 1,927,770 + glmS MCAODC_26080 0.30 -1.2 1,927,770 + glmS MCAODC_26080 0.30 -0.8 1,927,770 + glmS MCAODC_26080 0.30 -0.5 1,927,771 - glmS MCAODC_26080 0.30 +0.4 1,927,773 - glmS MCAODC_26080 0.31 +2.4 1,927,773 - glmS MCAODC_26080 0.31 -2.3 1,927,820 + glmS MCAODC_26080 0.41 -0.5 1,927,824 + glmS MCAODC_26080 0.42 -0.5 1,927,825 - glmS MCAODC_26080 0.42 +0.5 1,927,899 + glmS MCAODC_26080 0.59 -1.8 1,927,900 - glmS MCAODC_26080 0.59 +0.1 1,928,002 + glmS MCAODC_26080 0.82 -1.1 1,928,002 + glmS MCAODC_26080 0.82 -0.1 1,928,002 + glmS MCAODC_26080 0.82 -2.5 1,928,003 - glmS MCAODC_26080 0.82 -0.5 1,928,033 + glmS MCAODC_26080 0.88 +0.5 1,928,058 - +2.2 1,928,063 + +0.9 1,928,079 - +0.1 1,928,079 - +1.0 1,928,176 - +1.8 1,928,238 + glmL MCAODC_26085 0.11 +0.4 1,928,244 + glmL MCAODC_26085 0.12 +0.9 1,928,244 + glmL MCAODC_26085 0.12 +0.3 1,928,245 - glmL MCAODC_26085 0.12 +1.1 1,928,245 - glmL MCAODC_26085 0.12 -0.4 1,928,245 - glmL MCAODC_26085 0.12 +0.4 1,928,248 + glmL MCAODC_26085 0.12 -0.3 1,928,248 + glmL MCAODC_26085 0.12 +0.0 1,928,248 + glmL MCAODC_26085 0.12 -1.4 1,928,248 + glmL MCAODC_26085 0.12 -1.2 1,928,249 - glmL MCAODC_26085 0.12 -0.3 1,928,292 - glmL MCAODC_26085 0.15 +1.5 1,928,347 + glmL MCAODC_26085 0.19 -1.1 1,928,348 - glmL MCAODC_26085 0.19 -1.4 1,928,348 - glmL MCAODC_26085 0.19 -0.0 1,928,348 - glmL MCAODC_26085 0.19 +0.8 1,928,348 - glmL MCAODC_26085 0.19 -2.1 1,928,348 - glmL MCAODC_26085 0.19 +0.7 1,928,348 - glmL MCAODC_26085 0.19 +1.7 1,928,409 - glmL MCAODC_26085 0.23 +1.1 1,928,415 - glmL MCAODC_26085 0.24 -0.1 1,928,560 + glmL MCAODC_26085 0.34 +1.1 1,928,560 + glmL MCAODC_26085 0.34 +0.9 1,928,561 - glmL MCAODC_26085 0.34 +0.6 1,928,561 - glmL MCAODC_26085 0.34 +0.1 1,928,564 + glmL MCAODC_26085 0.35 +0.2 1,928,581 + glmL MCAODC_26085 0.36 +0.1 1,928,686 + glmL MCAODC_26085 0.43 -0.2 1,928,687 - glmL MCAODC_26085 0.43 +0.6 1,928,697 + glmL MCAODC_26085 0.44 +0.4 1,928,698 - glmL MCAODC_26085 0.44 -0.3 1,928,717 - glmL MCAODC_26085 0.46 -2.1 1,928,746 + glmL MCAODC_26085 0.48 +1.6 1,928,874 - glmL MCAODC_26085 0.57 +0.2 1,928,914 - glmL MCAODC_26085 0.60 +0.8 1,929,062 + glmL MCAODC_26085 0.70 +0.9 1,929,062 + glmL MCAODC_26085 0.70 +1.2 1,929,075 + glmL MCAODC_26085 0.71 +1.0 1,929,075 + glmL MCAODC_26085 0.71 -1.7 1,929,076 - glmL MCAODC_26085 0.71 -3.7
Or see this region's nucleotide sequence