Strain Fitness in Escherichia coli ECRC101 around MCAODC_26080

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_26075 and glmS are separated by 547 nucleotidesglmS and glmL overlap by 1 nucleotides MCAODC_26075: MCAODC_26075 - hypothetical protein, at 1,926,665 to 1,927,087 _26075 MCAODC_26080: glmS - methylaspartate mutase subunit S, at 1,927,635 to 1,928,084 glmS MCAODC_26085: glmL - methylaspartate mutase accessory protein GlmL, at 1,928,084 to 1,929,472 glmL Position (kb) 1927 1928 1929Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1926.713 kb on + strand, within MCAODC_26075at 1926.714 kb on - strand, within MCAODC_26075at 1926.820 kb on - strand, within MCAODC_26075at 1926.920 kb on - strand, within MCAODC_26075at 1927.078 kb on + strandat 1927.273 kb on - strandat 1927.554 kb on + strandat 1927.621 kb on - strandat 1927.770 kb on + strand, within glmSat 1927.770 kb on + strand, within glmSat 1927.770 kb on + strand, within glmSat 1927.770 kb on + strand, within glmSat 1927.771 kb on - strand, within glmSat 1927.773 kb on - strand, within glmSat 1927.773 kb on - strand, within glmSat 1927.820 kb on + strand, within glmSat 1927.824 kb on + strand, within glmSat 1927.825 kb on - strand, within glmSat 1927.899 kb on + strand, within glmSat 1927.900 kb on - strand, within glmSat 1928.002 kb on + strand, within glmSat 1928.002 kb on + strand, within glmSat 1928.002 kb on + strand, within glmSat 1928.003 kb on - strand, within glmSat 1928.033 kb on + strand, within glmSat 1928.058 kb on - strandat 1928.063 kb on + strandat 1928.079 kb on - strandat 1928.079 kb on - strandat 1928.176 kb on - strandat 1928.238 kb on + strand, within glmLat 1928.244 kb on + strand, within glmLat 1928.244 kb on + strand, within glmLat 1928.245 kb on - strand, within glmLat 1928.245 kb on - strand, within glmLat 1928.245 kb on - strand, within glmLat 1928.248 kb on + strand, within glmLat 1928.248 kb on + strand, within glmLat 1928.248 kb on + strand, within glmLat 1928.248 kb on + strand, within glmLat 1928.249 kb on - strand, within glmLat 1928.292 kb on - strand, within glmLat 1928.347 kb on + strand, within glmLat 1928.348 kb on - strand, within glmLat 1928.348 kb on - strand, within glmLat 1928.348 kb on - strand, within glmLat 1928.348 kb on - strand, within glmLat 1928.348 kb on - strand, within glmLat 1928.348 kb on - strand, within glmLat 1928.409 kb on - strand, within glmLat 1928.415 kb on - strand, within glmLat 1928.560 kb on + strand, within glmLat 1928.560 kb on + strand, within glmLat 1928.561 kb on - strand, within glmLat 1928.561 kb on - strand, within glmLat 1928.564 kb on + strand, within glmLat 1928.581 kb on + strand, within glmLat 1928.686 kb on + strand, within glmLat 1928.687 kb on - strand, within glmLat 1928.697 kb on + strand, within glmLat 1928.698 kb on - strand, within glmLat 1928.717 kb on - strand, within glmLat 1928.746 kb on + strand, within glmLat 1928.874 kb on - strand, within glmLat 1928.914 kb on - strand, within glmLat 1929.062 kb on + strand, within glmLat 1929.062 kb on + strand, within glmLat 1929.075 kb on + strand, within glmLat 1929.075 kb on + strand, within glmLat 1929.076 kb on - strand, within glmL

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,926,713 + MCAODC_26075 0.11 -0.0
1,926,714 - MCAODC_26075 0.12 +0.9
1,926,820 - MCAODC_26075 0.37 +1.5
1,926,920 - MCAODC_26075 0.60 +0.7
1,927,078 + +0.3
1,927,273 - +0.5
1,927,554 + +0.3
1,927,621 - -0.9
1,927,770 + glmS MCAODC_26080 0.30 +0.9
1,927,770 + glmS MCAODC_26080 0.30 -1.2
1,927,770 + glmS MCAODC_26080 0.30 -0.8
1,927,770 + glmS MCAODC_26080 0.30 -0.5
1,927,771 - glmS MCAODC_26080 0.30 +0.4
1,927,773 - glmS MCAODC_26080 0.31 +2.4
1,927,773 - glmS MCAODC_26080 0.31 -2.3
1,927,820 + glmS MCAODC_26080 0.41 -0.5
1,927,824 + glmS MCAODC_26080 0.42 -0.5
1,927,825 - glmS MCAODC_26080 0.42 +0.5
1,927,899 + glmS MCAODC_26080 0.59 -1.8
1,927,900 - glmS MCAODC_26080 0.59 +0.1
1,928,002 + glmS MCAODC_26080 0.82 -1.1
1,928,002 + glmS MCAODC_26080 0.82 -0.1
1,928,002 + glmS MCAODC_26080 0.82 -2.5
1,928,003 - glmS MCAODC_26080 0.82 -0.5
1,928,033 + glmS MCAODC_26080 0.88 +0.5
1,928,058 - +2.2
1,928,063 + +0.9
1,928,079 - +0.1
1,928,079 - +1.0
1,928,176 - +1.8
1,928,238 + glmL MCAODC_26085 0.11 +0.4
1,928,244 + glmL MCAODC_26085 0.12 +0.9
1,928,244 + glmL MCAODC_26085 0.12 +0.3
1,928,245 - glmL MCAODC_26085 0.12 +1.1
1,928,245 - glmL MCAODC_26085 0.12 -0.4
1,928,245 - glmL MCAODC_26085 0.12 +0.4
1,928,248 + glmL MCAODC_26085 0.12 -0.3
1,928,248 + glmL MCAODC_26085 0.12 +0.0
1,928,248 + glmL MCAODC_26085 0.12 -1.4
1,928,248 + glmL MCAODC_26085 0.12 -1.2
1,928,249 - glmL MCAODC_26085 0.12 -0.3
1,928,292 - glmL MCAODC_26085 0.15 +1.5
1,928,347 + glmL MCAODC_26085 0.19 -1.1
1,928,348 - glmL MCAODC_26085 0.19 -1.4
1,928,348 - glmL MCAODC_26085 0.19 -0.0
1,928,348 - glmL MCAODC_26085 0.19 +0.8
1,928,348 - glmL MCAODC_26085 0.19 -2.1
1,928,348 - glmL MCAODC_26085 0.19 +0.7
1,928,348 - glmL MCAODC_26085 0.19 +1.7
1,928,409 - glmL MCAODC_26085 0.23 +1.1
1,928,415 - glmL MCAODC_26085 0.24 -0.1
1,928,560 + glmL MCAODC_26085 0.34 +1.1
1,928,560 + glmL MCAODC_26085 0.34 +0.9
1,928,561 - glmL MCAODC_26085 0.34 +0.6
1,928,561 - glmL MCAODC_26085 0.34 +0.1
1,928,564 + glmL MCAODC_26085 0.35 +0.2
1,928,581 + glmL MCAODC_26085 0.36 +0.1
1,928,686 + glmL MCAODC_26085 0.43 -0.2
1,928,687 - glmL MCAODC_26085 0.43 +0.6
1,928,697 + glmL MCAODC_26085 0.44 +0.4
1,928,698 - glmL MCAODC_26085 0.44 -0.3
1,928,717 - glmL MCAODC_26085 0.46 -2.1
1,928,746 + glmL MCAODC_26085 0.48 +1.6
1,928,874 - glmL MCAODC_26085 0.57 +0.2
1,928,914 - glmL MCAODC_26085 0.60 +0.8
1,929,062 + glmL MCAODC_26085 0.70 +0.9
1,929,062 + glmL MCAODC_26085 0.70 +1.2
1,929,075 + glmL MCAODC_26085 0.71 +1.0
1,929,075 + glmL MCAODC_26085 0.71 -1.7
1,929,076 - glmL MCAODC_26085 0.71 -3.7

Or see this region's nucleotide sequence