Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_26070 and MCAODC_26075 are separated by 81 nucleotides MCAODC_26075 and glmS are separated by 547 nucleotides glmS and glmL overlap by 1 nucleotides
MCAODC_26070: MCAODC_26070 - hypothetical protein, at 1,925,639 to 1,926,583
_26070
MCAODC_26075: MCAODC_26075 - hypothetical protein, at 1,926,665 to 1,927,087
_26075
MCAODC_26080: glmS - methylaspartate mutase subunit S, at 1,927,635 to 1,928,084
glmS
MCAODC_26085: glmL - methylaspartate mutase accessory protein GlmL, at 1,928,084 to 1,929,472
glmL
Position (kb) 1926
1927
1928 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1925.749 kb on - strand, within MCAODC_26070 at 1925.752 kb on - strand, within MCAODC_26070 at 1925.803 kb on + strand, within MCAODC_26070 at 1925.811 kb on - strand, within MCAODC_26070 at 1925.812 kb on + strand, within MCAODC_26070 at 1925.813 kb on - strand, within MCAODC_26070 at 1925.897 kb on - strand, within MCAODC_26070 at 1926.008 kb on + strand, within MCAODC_26070 at 1926.231 kb on + strand, within MCAODC_26070 at 1926.232 kb on - strand, within MCAODC_26070 at 1926.232 kb on - strand, within MCAODC_26070 at 1926.294 kb on - strand, within MCAODC_26070 at 1926.332 kb on - strand, within MCAODC_26070 at 1926.353 kb on + strand, within MCAODC_26070 at 1926.353 kb on + strand, within MCAODC_26070 at 1926.353 kb on + strand, within MCAODC_26070 at 1926.371 kb on - strand, within MCAODC_26070 at 1926.387 kb on - strand, within MCAODC_26070 at 1926.610 kb on - strand at 1926.713 kb on + strand, within MCAODC_26075 at 1926.714 kb on - strand, within MCAODC_26075 at 1926.820 kb on - strand, within MCAODC_26075 at 1926.920 kb on - strand, within MCAODC_26075 at 1927.078 kb on + strand at 1927.273 kb on - strand at 1927.554 kb on + strand at 1927.621 kb on - strand at 1927.770 kb on + strand, within glmS at 1927.770 kb on + strand, within glmS at 1927.770 kb on + strand, within glmS at 1927.770 kb on + strand, within glmS at 1927.771 kb on - strand, within glmS at 1927.773 kb on - strand, within glmS at 1927.773 kb on - strand, within glmS at 1927.820 kb on + strand, within glmS at 1927.824 kb on + strand, within glmS at 1927.825 kb on - strand, within glmS at 1927.899 kb on + strand, within glmS at 1927.900 kb on - strand, within glmS at 1928.002 kb on + strand, within glmS at 1928.002 kb on + strand, within glmS at 1928.002 kb on + strand, within glmS at 1928.003 kb on - strand, within glmS at 1928.033 kb on + strand, within glmS at 1928.058 kb on - strand at 1928.063 kb on + strand at 1928.079 kb on - strand at 1928.079 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,925,749 - MCAODC_26070 0.12 -0.4 1,925,752 - MCAODC_26070 0.12 -0.1 1,925,803 + MCAODC_26070 0.17 +0.8 1,925,811 - MCAODC_26070 0.18 +0.8 1,925,812 + MCAODC_26070 0.18 +1.4 1,925,813 - MCAODC_26070 0.18 +0.3 1,925,897 - MCAODC_26070 0.27 +0.7 1,926,008 + MCAODC_26070 0.39 +2.8 1,926,231 + MCAODC_26070 0.63 +1.1 1,926,232 - MCAODC_26070 0.63 -1.6 1,926,232 - MCAODC_26070 0.63 -1.3 1,926,294 - MCAODC_26070 0.69 +0.3 1,926,332 - MCAODC_26070 0.73 -1.1 1,926,353 + MCAODC_26070 0.76 +1.9 1,926,353 + MCAODC_26070 0.76 -0.9 1,926,353 + MCAODC_26070 0.76 -0.3 1,926,371 - MCAODC_26070 0.77 +1.8 1,926,387 - MCAODC_26070 0.79 -1.1 1,926,610 - +0.4 1,926,713 + MCAODC_26075 0.11 -0.0 1,926,714 - MCAODC_26075 0.12 +0.9 1,926,820 - MCAODC_26075 0.37 +1.5 1,926,920 - MCAODC_26075 0.60 +0.7 1,927,078 + +0.3 1,927,273 - +0.5 1,927,554 + +0.3 1,927,621 - -0.9 1,927,770 + glmS MCAODC_26080 0.30 +0.9 1,927,770 + glmS MCAODC_26080 0.30 -1.2 1,927,770 + glmS MCAODC_26080 0.30 -0.8 1,927,770 + glmS MCAODC_26080 0.30 -0.5 1,927,771 - glmS MCAODC_26080 0.30 +0.4 1,927,773 - glmS MCAODC_26080 0.31 +2.4 1,927,773 - glmS MCAODC_26080 0.31 -2.3 1,927,820 + glmS MCAODC_26080 0.41 -0.5 1,927,824 + glmS MCAODC_26080 0.42 -0.5 1,927,825 - glmS MCAODC_26080 0.42 +0.5 1,927,899 + glmS MCAODC_26080 0.59 -1.8 1,927,900 - glmS MCAODC_26080 0.59 +0.1 1,928,002 + glmS MCAODC_26080 0.82 -1.1 1,928,002 + glmS MCAODC_26080 0.82 -0.1 1,928,002 + glmS MCAODC_26080 0.82 -2.5 1,928,003 - glmS MCAODC_26080 0.82 -0.5 1,928,033 + glmS MCAODC_26080 0.88 +0.5 1,928,058 - +2.2 1,928,063 + +0.9 1,928,079 - +0.1 1,928,079 - +1.0
Or see this region's nucleotide sequence