Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_25800 and MCAODC_25805 are separated by 474 nucleotides MCAODC_25805 and MCAODC_25810 are separated by 211 nucleotides MCAODC_25810 and ninG overlap by 4 nucleotides
MCAODC_25800: MCAODC_25800 - antitermination protein, at 1,880,690 to 1,881,379
_25800
MCAODC_25805: MCAODC_25805 - DUF2219 domain-containing protein, at 1,881,854 to 1,882,813
_25805
MCAODC_25810: MCAODC_25810 - Serine/threonine-protein phosphatase, at 1,883,025 to 1,883,690
_25810
MCAODC_25815: ninG - Protein ninG, at 1,883,687 to 1,884,307
ninG
Position (kb)
1881
1882
1883 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1880.881 kb on - strand, within MCAODC_25800 at 1880.881 kb on - strand, within MCAODC_25800 at 1880.881 kb on - strand, within MCAODC_25800 at 1880.881 kb on - strand, within MCAODC_25800 at 1880.881 kb on - strand, within MCAODC_25800 at 1880.881 kb on - strand, within MCAODC_25800 at 1880.982 kb on - strand, within MCAODC_25800 at 1881.054 kb on + strand, within MCAODC_25800 at 1881.259 kb on + strand, within MCAODC_25800 at 1881.341 kb on - strand at 1881.395 kb on + strand at 1881.457 kb on + strand at 1881.457 kb on + strand at 1881.457 kb on + strand at 1881.498 kb on + strand at 1881.499 kb on - strand at 1881.500 kb on + strand at 1881.500 kb on + strand at 1881.500 kb on + strand at 1881.501 kb on - strand at 1881.501 kb on - strand at 1881.501 kb on - strand at 1881.501 kb on - strand at 1881.808 kb on + strand at 1881.812 kb on + strand at 1882.042 kb on + strand, within MCAODC_25805 at 1882.114 kb on + strand, within MCAODC_25805 at 1882.117 kb on + strand, within MCAODC_25805 at 1882.163 kb on + strand, within MCAODC_25805 at 1882.164 kb on - strand, within MCAODC_25805 at 1882.221 kb on + strand, within MCAODC_25805 at 1882.233 kb on + strand, within MCAODC_25805 at 1882.233 kb on + strand, within MCAODC_25805 at 1882.233 kb on + strand, within MCAODC_25805 at 1882.277 kb on - strand, within MCAODC_25805 at 1882.451 kb on + strand, within MCAODC_25805 at 1882.719 kb on + strand at 1882.731 kb on + strand at 1882.952 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,880,881 - MCAODC_25800 0.28 +1.7 1,880,881 - MCAODC_25800 0.28 -1.6 1,880,881 - MCAODC_25800 0.28 -2.5 1,880,881 - MCAODC_25800 0.28 -2.3 1,880,881 - MCAODC_25800 0.28 +0.2 1,880,881 - MCAODC_25800 0.28 -1.8 1,880,982 - MCAODC_25800 0.42 +0.3 1,881,054 + MCAODC_25800 0.53 -3.3 1,881,259 + MCAODC_25800 0.82 -0.4 1,881,341 - +2.3 1,881,395 + +0.8 1,881,457 + -0.6 1,881,457 + -2.5 1,881,457 + +0.1 1,881,498 + -0.9 1,881,499 - -2.6 1,881,500 + +1.3 1,881,500 + +0.8 1,881,500 + +1.1 1,881,501 - -0.7 1,881,501 - -2.5 1,881,501 - -1.6 1,881,501 - -1.7 1,881,808 + -1.2 1,881,812 + +1.8 1,882,042 + MCAODC_25805 0.20 -1.0 1,882,114 + MCAODC_25805 0.27 -1.1 1,882,117 + MCAODC_25805 0.27 -0.7 1,882,163 + MCAODC_25805 0.32 -1.7 1,882,164 - MCAODC_25805 0.32 +1.0 1,882,221 + MCAODC_25805 0.38 -1.0 1,882,233 + MCAODC_25805 0.39 +0.7 1,882,233 + MCAODC_25805 0.39 +0.7 1,882,233 + MCAODC_25805 0.39 +1.6 1,882,277 - MCAODC_25805 0.44 +0.6 1,882,451 + MCAODC_25805 0.62 +1.3 1,882,719 + -3.4 1,882,731 + +1.4 1,882,952 + +0.9
Or see this region's nucleotide sequence