Strain Fitness in Escherichia coli ECRC101 around MCAODC_25805

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_25800 and MCAODC_25805 are separated by 474 nucleotidesMCAODC_25805 and MCAODC_25810 are separated by 211 nucleotidesMCAODC_25810 and ninG overlap by 4 nucleotides MCAODC_25800: MCAODC_25800 - antitermination protein, at 1,880,690 to 1,881,379 _25800 MCAODC_25805: MCAODC_25805 - DUF2219 domain-containing protein, at 1,881,854 to 1,882,813 _25805 MCAODC_25810: MCAODC_25810 - Serine/threonine-protein phosphatase, at 1,883,025 to 1,883,690 _25810 MCAODC_25815: ninG - Protein ninG, at 1,883,687 to 1,884,307 ninG Position (kb) 1881 1882 1883Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1880.881 kb on - strand, within MCAODC_25800at 1880.881 kb on - strand, within MCAODC_25800at 1880.881 kb on - strand, within MCAODC_25800at 1880.881 kb on - strand, within MCAODC_25800at 1880.881 kb on - strand, within MCAODC_25800at 1880.881 kb on - strand, within MCAODC_25800at 1880.982 kb on - strand, within MCAODC_25800at 1881.054 kb on + strand, within MCAODC_25800at 1881.259 kb on + strand, within MCAODC_25800at 1881.341 kb on - strandat 1881.395 kb on + strandat 1881.457 kb on + strandat 1881.457 kb on + strandat 1881.457 kb on + strandat 1881.498 kb on + strandat 1881.499 kb on - strandat 1881.500 kb on + strandat 1881.500 kb on + strandat 1881.500 kb on + strandat 1881.501 kb on - strandat 1881.501 kb on - strandat 1881.501 kb on - strandat 1881.501 kb on - strandat 1881.808 kb on + strandat 1881.812 kb on + strandat 1882.042 kb on + strand, within MCAODC_25805at 1882.114 kb on + strand, within MCAODC_25805at 1882.117 kb on + strand, within MCAODC_25805at 1882.163 kb on + strand, within MCAODC_25805at 1882.164 kb on - strand, within MCAODC_25805at 1882.221 kb on + strand, within MCAODC_25805at 1882.233 kb on + strand, within MCAODC_25805at 1882.233 kb on + strand, within MCAODC_25805at 1882.233 kb on + strand, within MCAODC_25805at 1882.277 kb on - strand, within MCAODC_25805at 1882.451 kb on + strand, within MCAODC_25805at 1882.719 kb on + strandat 1882.731 kb on + strandat 1882.952 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,880,881 - MCAODC_25800 0.28 +1.7
1,880,881 - MCAODC_25800 0.28 -1.6
1,880,881 - MCAODC_25800 0.28 -2.5
1,880,881 - MCAODC_25800 0.28 -2.3
1,880,881 - MCAODC_25800 0.28 +0.2
1,880,881 - MCAODC_25800 0.28 -1.8
1,880,982 - MCAODC_25800 0.42 +0.3
1,881,054 + MCAODC_25800 0.53 -3.3
1,881,259 + MCAODC_25800 0.82 -0.4
1,881,341 - +2.3
1,881,395 + +0.8
1,881,457 + -0.6
1,881,457 + -2.5
1,881,457 + +0.1
1,881,498 + -0.9
1,881,499 - -2.6
1,881,500 + +1.3
1,881,500 + +0.8
1,881,500 + +1.1
1,881,501 - -0.7
1,881,501 - -2.5
1,881,501 - -1.6
1,881,501 - -1.7
1,881,808 + -1.2
1,881,812 + +1.8
1,882,042 + MCAODC_25805 0.20 -1.0
1,882,114 + MCAODC_25805 0.27 -1.1
1,882,117 + MCAODC_25805 0.27 -0.7
1,882,163 + MCAODC_25805 0.32 -1.7
1,882,164 - MCAODC_25805 0.32 +1.0
1,882,221 + MCAODC_25805 0.38 -1.0
1,882,233 + MCAODC_25805 0.39 +0.7
1,882,233 + MCAODC_25805 0.39 +0.7
1,882,233 + MCAODC_25805 0.39 +1.6
1,882,277 - MCAODC_25805 0.44 +0.6
1,882,451 + MCAODC_25805 0.62 +1.3
1,882,719 + -3.4
1,882,731 + +1.4
1,882,952 + +0.9

Or see this region's nucleotide sequence