Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_25780 and MCAODC_25785 are separated by 621 nucleotides MCAODC_25785 and MCAODC_25790 are separated by 99 nucleotides MCAODC_25790 and MCAODC_25795 overlap by 62 nucleotides MCAODC_25795 and MCAODC_25800 are separated by 183 nucleotides
MCAODC_25780: MCAODC_25780 - holin, at 1,878,682 to 1,878,897
_25780
MCAODC_25785: MCAODC_25785 - DUF3927 domain-containing protein, at 1,879,519 to 1,879,599
_25785
MCAODC_25790: MCAODC_25790 - hypothetical protein, at 1,879,699 to 1,879,824
_25790
MCAODC_25795: MCAODC_25795 - Membrane protein, at 1,879,763 to 1,880,506
_25795
MCAODC_25800: MCAODC_25800 - antitermination protein, at 1,880,690 to 1,881,379
_25800
Position (kb)
1879
1880
1881 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1878.768 kb on + strand, within MCAODC_25780 at 1878.948 kb on - strand at 1878.971 kb on - strand at 1878.982 kb on + strand at 1878.983 kb on - strand at 1878.993 kb on + strand at 1879.006 kb on - strand at 1879.018 kb on + strand at 1879.021 kb on - strand at 1879.044 kb on + strand at 1879.044 kb on + strand at 1879.044 kb on + strand at 1879.045 kb on - strand at 1879.045 kb on - strand at 1879.068 kb on + strand at 1879.162 kb on + strand at 1879.176 kb on - strand at 1879.183 kb on - strand at 1879.199 kb on - strand at 1879.211 kb on - strand at 1879.220 kb on - strand at 1879.378 kb on - strand at 1879.378 kb on - strand at 1879.556 kb on - strand, within MCAODC_25785 at 1880.552 kb on + strand at 1880.573 kb on + strand at 1880.573 kb on + strand at 1880.573 kb on + strand at 1880.573 kb on + strand at 1880.577 kb on + strand at 1880.599 kb on - strand at 1880.681 kb on - strand at 1880.681 kb on - strand at 1880.762 kb on + strand, within MCAODC_25800 at 1880.762 kb on + strand, within MCAODC_25800 at 1880.818 kb on + strand, within MCAODC_25800 at 1880.881 kb on - strand, within MCAODC_25800 at 1880.881 kb on - strand, within MCAODC_25800 at 1880.881 kb on - strand, within MCAODC_25800 at 1880.881 kb on - strand, within MCAODC_25800 at 1880.881 kb on - strand, within MCAODC_25800 at 1880.881 kb on - strand, within MCAODC_25800 at 1880.982 kb on - strand, within MCAODC_25800 at 1881.054 kb on + strand, within MCAODC_25800 at 1881.259 kb on + strand, within MCAODC_25800 at 1881.341 kb on - strand at 1881.395 kb on + strand at 1881.457 kb on + strand at 1881.457 kb on + strand at 1881.457 kb on + strand at 1881.498 kb on + strand at 1881.499 kb on - strand at 1881.500 kb on + strand at 1881.500 kb on + strand at 1881.500 kb on + strand at 1881.501 kb on - strand at 1881.501 kb on - strand at 1881.501 kb on - strand at 1881.501 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,878,768 + MCAODC_25780 0.40 -1.1 1,878,948 - -1.2 1,878,971 - +1.0 1,878,982 + +0.3 1,878,983 - +0.2 1,878,993 + +0.4 1,879,006 - -0.6 1,879,018 + -0.3 1,879,021 - -0.9 1,879,044 + -0.1 1,879,044 + -1.8 1,879,044 + -1.0 1,879,045 - -0.0 1,879,045 - +1.7 1,879,068 + -0.6 1,879,162 + -2.7 1,879,176 - -0.1 1,879,183 - -0.7 1,879,199 - -0.3 1,879,211 - -0.1 1,879,220 - +0.1 1,879,378 - +0.5 1,879,378 - +1.2 1,879,556 - MCAODC_25785 0.46 +0.2 1,880,552 + -0.9 1,880,573 + +0.2 1,880,573 + +1.0 1,880,573 + -0.8 1,880,573 + -2.2 1,880,577 + +1.6 1,880,599 - +0.5 1,880,681 - +1.2 1,880,681 - -1.5 1,880,762 + MCAODC_25800 0.10 +1.4 1,880,762 + MCAODC_25800 0.10 -0.1 1,880,818 + MCAODC_25800 0.19 -1.0 1,880,881 - MCAODC_25800 0.28 +1.7 1,880,881 - MCAODC_25800 0.28 -1.6 1,880,881 - MCAODC_25800 0.28 -2.5 1,880,881 - MCAODC_25800 0.28 -2.3 1,880,881 - MCAODC_25800 0.28 +0.2 1,880,881 - MCAODC_25800 0.28 -1.8 1,880,982 - MCAODC_25800 0.42 +0.3 1,881,054 + MCAODC_25800 0.53 -3.3 1,881,259 + MCAODC_25800 0.82 -0.4 1,881,341 - +2.3 1,881,395 + +0.8 1,881,457 + -0.6 1,881,457 + -2.5 1,881,457 + +0.1 1,881,498 + -0.9 1,881,499 - -2.6 1,881,500 + +1.3 1,881,500 + +0.8 1,881,500 + +1.1 1,881,501 - -0.7 1,881,501 - -2.5 1,881,501 - -1.6 1,881,501 - -1.7
Or see this region's nucleotide sequence