Strain Fitness in Escherichia coli ECRC101 around MCAODC_25795

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_25780 and MCAODC_25785 are separated by 621 nucleotidesMCAODC_25785 and MCAODC_25790 are separated by 99 nucleotidesMCAODC_25790 and MCAODC_25795 overlap by 62 nucleotidesMCAODC_25795 and MCAODC_25800 are separated by 183 nucleotides MCAODC_25780: MCAODC_25780 - holin, at 1,878,682 to 1,878,897 _25780 MCAODC_25785: MCAODC_25785 - DUF3927 domain-containing protein, at 1,879,519 to 1,879,599 _25785 MCAODC_25790: MCAODC_25790 - hypothetical protein, at 1,879,699 to 1,879,824 _25790 MCAODC_25795: MCAODC_25795 - Membrane protein, at 1,879,763 to 1,880,506 _25795 MCAODC_25800: MCAODC_25800 - antitermination protein, at 1,880,690 to 1,881,379 _25800 Position (kb) 1879 1880 1881Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1878.768 kb on + strand, within MCAODC_25780at 1878.948 kb on - strandat 1878.971 kb on - strandat 1878.982 kb on + strandat 1878.983 kb on - strandat 1878.993 kb on + strandat 1879.006 kb on - strandat 1879.018 kb on + strandat 1879.021 kb on - strandat 1879.044 kb on + strandat 1879.044 kb on + strandat 1879.044 kb on + strandat 1879.045 kb on - strandat 1879.045 kb on - strandat 1879.068 kb on + strandat 1879.162 kb on + strandat 1879.176 kb on - strandat 1879.183 kb on - strandat 1879.199 kb on - strandat 1879.211 kb on - strandat 1879.220 kb on - strandat 1879.378 kb on - strandat 1879.378 kb on - strandat 1879.556 kb on - strand, within MCAODC_25785at 1880.552 kb on + strandat 1880.573 kb on + strandat 1880.573 kb on + strandat 1880.573 kb on + strandat 1880.573 kb on + strandat 1880.577 kb on + strandat 1880.599 kb on - strandat 1880.681 kb on - strandat 1880.681 kb on - strandat 1880.762 kb on + strand, within MCAODC_25800at 1880.762 kb on + strand, within MCAODC_25800at 1880.818 kb on + strand, within MCAODC_25800at 1880.881 kb on - strand, within MCAODC_25800at 1880.881 kb on - strand, within MCAODC_25800at 1880.881 kb on - strand, within MCAODC_25800at 1880.881 kb on - strand, within MCAODC_25800at 1880.881 kb on - strand, within MCAODC_25800at 1880.881 kb on - strand, within MCAODC_25800at 1880.982 kb on - strand, within MCAODC_25800at 1881.054 kb on + strand, within MCAODC_25800at 1881.259 kb on + strand, within MCAODC_25800at 1881.341 kb on - strandat 1881.395 kb on + strandat 1881.457 kb on + strandat 1881.457 kb on + strandat 1881.457 kb on + strandat 1881.498 kb on + strandat 1881.499 kb on - strandat 1881.500 kb on + strandat 1881.500 kb on + strandat 1881.500 kb on + strandat 1881.501 kb on - strandat 1881.501 kb on - strandat 1881.501 kb on - strandat 1881.501 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,878,768 + MCAODC_25780 0.40 -1.1
1,878,948 - -1.2
1,878,971 - +1.0
1,878,982 + +0.3
1,878,983 - +0.2
1,878,993 + +0.4
1,879,006 - -0.6
1,879,018 + -0.3
1,879,021 - -0.9
1,879,044 + -0.1
1,879,044 + -1.8
1,879,044 + -1.0
1,879,045 - -0.0
1,879,045 - +1.7
1,879,068 + -0.6
1,879,162 + -2.7
1,879,176 - -0.1
1,879,183 - -0.7
1,879,199 - -0.3
1,879,211 - -0.1
1,879,220 - +0.1
1,879,378 - +0.5
1,879,378 - +1.2
1,879,556 - MCAODC_25785 0.46 +0.2
1,880,552 + -0.9
1,880,573 + +0.2
1,880,573 + +1.0
1,880,573 + -0.8
1,880,573 + -2.2
1,880,577 + +1.6
1,880,599 - +0.5
1,880,681 - +1.2
1,880,681 - -1.5
1,880,762 + MCAODC_25800 0.10 +1.4
1,880,762 + MCAODC_25800 0.10 -0.1
1,880,818 + MCAODC_25800 0.19 -1.0
1,880,881 - MCAODC_25800 0.28 +1.7
1,880,881 - MCAODC_25800 0.28 -1.6
1,880,881 - MCAODC_25800 0.28 -2.5
1,880,881 - MCAODC_25800 0.28 -2.3
1,880,881 - MCAODC_25800 0.28 +0.2
1,880,881 - MCAODC_25800 0.28 -1.8
1,880,982 - MCAODC_25800 0.42 +0.3
1,881,054 + MCAODC_25800 0.53 -3.3
1,881,259 + MCAODC_25800 0.82 -0.4
1,881,341 - +2.3
1,881,395 + +0.8
1,881,457 + -0.6
1,881,457 + -2.5
1,881,457 + +0.1
1,881,498 + -0.9
1,881,499 - -2.6
1,881,500 + +1.3
1,881,500 + +0.8
1,881,500 + +1.1
1,881,501 - -0.7
1,881,501 - -2.5
1,881,501 - -1.6
1,881,501 - -1.7

Or see this region's nucleotide sequence