Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rrrD and MCAODC_25780 overlap by 1 nucleotides MCAODC_25780 and MCAODC_25785 are separated by 621 nucleotides MCAODC_25785 and MCAODC_25790 are separated by 99 nucleotides MCAODC_25790 and MCAODC_25795 overlap by 62 nucleotides
MCAODC_25775: rrrD - lysozyme RrrD, at 1,878,185 to 1,878,682
rrrD
MCAODC_25780: MCAODC_25780 - holin, at 1,878,682 to 1,878,897
_25780
MCAODC_25785: MCAODC_25785 - DUF3927 domain-containing protein, at 1,879,519 to 1,879,599
_25785
MCAODC_25790: MCAODC_25790 - hypothetical protein, at 1,879,699 to 1,879,824
_25790
MCAODC_25795: MCAODC_25795 - Membrane protein, at 1,879,763 to 1,880,506
_25795
Position (kb)
1879
1880 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1878.530 kb on + strand, within rrrD at 1878.530 kb on + strand, within rrrD at 1878.530 kb on + strand, within rrrD at 1878.531 kb on - strand, within rrrD at 1878.531 kb on - strand, within rrrD at 1878.531 kb on - strand, within rrrD at 1878.550 kb on + strand, within rrrD at 1878.551 kb on - strand, within rrrD at 1878.558 kb on + strand, within rrrD at 1878.563 kb on + strand, within rrrD at 1878.564 kb on - strand, within rrrD at 1878.564 kb on - strand, within rrrD at 1878.669 kb on - strand at 1878.703 kb on - strand at 1878.703 kb on - strand at 1878.703 kb on - strand at 1878.709 kb on - strand, within MCAODC_25780 at 1878.729 kb on - strand, within MCAODC_25780 at 1878.744 kb on - strand, within MCAODC_25780 at 1878.768 kb on + strand, within MCAODC_25780 at 1878.948 kb on - strand at 1878.971 kb on - strand at 1878.982 kb on + strand at 1878.983 kb on - strand at 1878.993 kb on + strand at 1879.006 kb on - strand at 1879.018 kb on + strand at 1879.021 kb on - strand at 1879.044 kb on + strand at 1879.044 kb on + strand at 1879.044 kb on + strand at 1879.045 kb on - strand at 1879.045 kb on - strand at 1879.068 kb on + strand at 1879.162 kb on + strand at 1879.176 kb on - strand at 1879.183 kb on - strand at 1879.199 kb on - strand at 1879.211 kb on - strand at 1879.220 kb on - strand at 1879.378 kb on - strand at 1879.378 kb on - strand at 1879.556 kb on - strand, within MCAODC_25785 at 1880.552 kb on + strand at 1880.573 kb on + strand at 1880.573 kb on + strand at 1880.573 kb on + strand at 1880.573 kb on + strand at 1880.577 kb on + strand at 1880.599 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,878,530 + rrrD MCAODC_25775 0.69 -1.3 1,878,530 + rrrD MCAODC_25775 0.69 +0.9 1,878,530 + rrrD MCAODC_25775 0.69 +0.0 1,878,531 - rrrD MCAODC_25775 0.69 +0.9 1,878,531 - rrrD MCAODC_25775 0.69 -2.8 1,878,531 - rrrD MCAODC_25775 0.69 -0.0 1,878,550 + rrrD MCAODC_25775 0.73 -0.3 1,878,551 - rrrD MCAODC_25775 0.73 -0.4 1,878,558 + rrrD MCAODC_25775 0.75 -0.2 1,878,563 + rrrD MCAODC_25775 0.76 +0.3 1,878,564 - rrrD MCAODC_25775 0.76 -1.9 1,878,564 - rrrD MCAODC_25775 0.76 -3.1 1,878,669 - +0.7 1,878,703 - +0.2 1,878,703 - -1.4 1,878,703 - -1.6 1,878,709 - MCAODC_25780 0.12 +1.2 1,878,729 - MCAODC_25780 0.22 -3.0 1,878,744 - MCAODC_25780 0.29 +0.9 1,878,768 + MCAODC_25780 0.40 -1.1 1,878,948 - -1.2 1,878,971 - +1.0 1,878,982 + +0.3 1,878,983 - +0.2 1,878,993 + +0.4 1,879,006 - -0.6 1,879,018 + -0.3 1,879,021 - -0.9 1,879,044 + -0.1 1,879,044 + -1.8 1,879,044 + -1.0 1,879,045 - -0.0 1,879,045 - +1.7 1,879,068 + -0.6 1,879,162 + -2.7 1,879,176 - -0.1 1,879,183 - -0.7 1,879,199 - -0.3 1,879,211 - -0.1 1,879,220 - +0.1 1,879,378 - +0.5 1,879,378 - +1.2 1,879,556 - MCAODC_25785 0.46 +0.2 1,880,552 + -0.9 1,880,573 + +0.2 1,880,573 + +1.0 1,880,573 + -0.8 1,880,573 + -2.2 1,880,577 + +1.6 1,880,599 - +0.5
Or see this region's nucleotide sequence