Strain Fitness in Escherichia coli ECRC101 around MCAODC_25785

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrrrD and MCAODC_25780 overlap by 1 nucleotidesMCAODC_25780 and MCAODC_25785 are separated by 621 nucleotidesMCAODC_25785 and MCAODC_25790 are separated by 99 nucleotidesMCAODC_25790 and MCAODC_25795 overlap by 62 nucleotides MCAODC_25775: rrrD - lysozyme RrrD, at 1,878,185 to 1,878,682 rrrD MCAODC_25780: MCAODC_25780 - holin, at 1,878,682 to 1,878,897 _25780 MCAODC_25785: MCAODC_25785 - DUF3927 domain-containing protein, at 1,879,519 to 1,879,599 _25785 MCAODC_25790: MCAODC_25790 - hypothetical protein, at 1,879,699 to 1,879,824 _25790 MCAODC_25795: MCAODC_25795 - Membrane protein, at 1,879,763 to 1,880,506 _25795 Position (kb) 1879 1880Strain fitness (log2 ratio) -3 -2 -1 0 1at 1878.530 kb on + strand, within rrrDat 1878.530 kb on + strand, within rrrDat 1878.530 kb on + strand, within rrrDat 1878.531 kb on - strand, within rrrDat 1878.531 kb on - strand, within rrrDat 1878.531 kb on - strand, within rrrDat 1878.550 kb on + strand, within rrrDat 1878.551 kb on - strand, within rrrDat 1878.558 kb on + strand, within rrrDat 1878.563 kb on + strand, within rrrDat 1878.564 kb on - strand, within rrrDat 1878.564 kb on - strand, within rrrDat 1878.669 kb on - strandat 1878.703 kb on - strandat 1878.703 kb on - strandat 1878.703 kb on - strandat 1878.709 kb on - strand, within MCAODC_25780at 1878.729 kb on - strand, within MCAODC_25780at 1878.744 kb on - strand, within MCAODC_25780at 1878.768 kb on + strand, within MCAODC_25780at 1878.948 kb on - strandat 1878.971 kb on - strandat 1878.982 kb on + strandat 1878.983 kb on - strandat 1878.993 kb on + strandat 1879.006 kb on - strandat 1879.018 kb on + strandat 1879.021 kb on - strandat 1879.044 kb on + strandat 1879.044 kb on + strandat 1879.044 kb on + strandat 1879.045 kb on - strandat 1879.045 kb on - strandat 1879.068 kb on + strandat 1879.162 kb on + strandat 1879.176 kb on - strandat 1879.183 kb on - strandat 1879.199 kb on - strandat 1879.211 kb on - strandat 1879.220 kb on - strandat 1879.378 kb on - strandat 1879.378 kb on - strandat 1879.556 kb on - strand, within MCAODC_25785at 1880.552 kb on + strandat 1880.573 kb on + strandat 1880.573 kb on + strandat 1880.573 kb on + strandat 1880.573 kb on + strandat 1880.577 kb on + strandat 1880.599 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,878,530 + rrrD MCAODC_25775 0.69 -1.3
1,878,530 + rrrD MCAODC_25775 0.69 +0.9
1,878,530 + rrrD MCAODC_25775 0.69 +0.0
1,878,531 - rrrD MCAODC_25775 0.69 +0.9
1,878,531 - rrrD MCAODC_25775 0.69 -2.8
1,878,531 - rrrD MCAODC_25775 0.69 -0.0
1,878,550 + rrrD MCAODC_25775 0.73 -0.3
1,878,551 - rrrD MCAODC_25775 0.73 -0.4
1,878,558 + rrrD MCAODC_25775 0.75 -0.2
1,878,563 + rrrD MCAODC_25775 0.76 +0.3
1,878,564 - rrrD MCAODC_25775 0.76 -1.9
1,878,564 - rrrD MCAODC_25775 0.76 -3.1
1,878,669 - +0.7
1,878,703 - +0.2
1,878,703 - -1.4
1,878,703 - -1.6
1,878,709 - MCAODC_25780 0.12 +1.2
1,878,729 - MCAODC_25780 0.22 -3.0
1,878,744 - MCAODC_25780 0.29 +0.9
1,878,768 + MCAODC_25780 0.40 -1.1
1,878,948 - -1.2
1,878,971 - +1.0
1,878,982 + +0.3
1,878,983 - +0.2
1,878,993 + +0.4
1,879,006 - -0.6
1,879,018 + -0.3
1,879,021 - -0.9
1,879,044 + -0.1
1,879,044 + -1.8
1,879,044 + -1.0
1,879,045 - -0.0
1,879,045 - +1.7
1,879,068 + -0.6
1,879,162 + -2.7
1,879,176 - -0.1
1,879,183 - -0.7
1,879,199 - -0.3
1,879,211 - -0.1
1,879,220 - +0.1
1,879,378 - +0.5
1,879,378 - +1.2
1,879,556 - MCAODC_25785 0.46 +0.2
1,880,552 + -0.9
1,880,573 + +0.2
1,880,573 + +1.0
1,880,573 + -0.8
1,880,573 + -2.2
1,880,577 + +1.6
1,880,599 - +0.5

Or see this region's nucleotide sequence