Strain Fitness in Escherichia coli ECRC101 around MCAODC_25755

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_25745 and MCAODC_25750 overlap by 1 nucleotidesMCAODC_25750 and gpA1 overlap by 4 nucleotidesgpA1 and MCAODC_25760 overlap by 1 nucleotides MCAODC_25745: MCAODC_25745 - phage portal protein, at 1,873,052 to 1,874,104 _25745 MCAODC_25750: MCAODC_25750 - hypothetical protein, at 1,874,104 to 1,874,316 _25750 MCAODC_25755: gpA1 - DNA packaging protein, at 1,874,313 to 1,876,415 gpA1 MCAODC_25760: MCAODC_25760 - Bacteriophage DNA packaging protein terminase, small subunit, at 1,876,415 to 1,876,906 _25760 Position (kb) 1874 1875 1876 1877Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1873.493 kb on - strand, within MCAODC_25745at 1873.493 kb on - strand, within MCAODC_25745at 1873.493 kb on - strand, within MCAODC_25745at 1873.493 kb on - strand, within MCAODC_25745at 1873.640 kb on + strand, within MCAODC_25745at 1873.641 kb on - strand, within MCAODC_25745at 1873.776 kb on - strand, within MCAODC_25745at 1873.815 kb on - strand, within MCAODC_25745at 1873.837 kb on + strand, within MCAODC_25745at 1873.880 kb on + strand, within MCAODC_25745at 1873.880 kb on + strand, within MCAODC_25745at 1873.931 kb on + strand, within MCAODC_25745at 1874.019 kb on + strandat 1874.020 kb on - strandat 1874.149 kb on - strand, within MCAODC_25750at 1874.149 kb on - strand, within MCAODC_25750at 1874.277 kb on + strand, within MCAODC_25750at 1874.278 kb on - strand, within MCAODC_25750at 1874.278 kb on - strand, within MCAODC_25750at 1874.359 kb on - strandat 1874.530 kb on + strand, within gpA1at 1874.531 kb on + strand, within gpA1at 1874.605 kb on + strand, within gpA1at 1874.606 kb on - strand, within gpA1at 1874.606 kb on - strand, within gpA1at 1874.606 kb on - strand, within gpA1at 1874.657 kb on - strand, within gpA1at 1874.657 kb on - strand, within gpA1at 1874.792 kb on + strand, within gpA1at 1874.793 kb on - strand, within gpA1at 1874.793 kb on - strand, within gpA1at 1874.840 kb on - strand, within gpA1at 1874.843 kb on + strand, within gpA1at 1874.843 kb on + strand, within gpA1at 1874.844 kb on - strand, within gpA1at 1874.850 kb on - strand, within gpA1at 1874.850 kb on - strand, within gpA1at 1874.850 kb on - strand, within gpA1at 1874.885 kb on + strand, within gpA1at 1874.894 kb on + strand, within gpA1at 1874.894 kb on + strand, within gpA1at 1874.894 kb on + strand, within gpA1at 1875.092 kb on - strand, within gpA1at 1875.092 kb on - strand, within gpA1at 1875.102 kb on - strand, within gpA1at 1875.128 kb on - strand, within gpA1at 1875.289 kb on + strand, within gpA1at 1875.294 kb on + strand, within gpA1at 1875.294 kb on + strand, within gpA1at 1875.295 kb on - strand, within gpA1at 1875.295 kb on - strand, within gpA1at 1875.353 kb on - strand, within gpA1at 1875.353 kb on - strand, within gpA1at 1875.440 kb on + strand, within gpA1at 1875.440 kb on + strand, within gpA1at 1875.441 kb on - strand, within gpA1at 1875.471 kb on - strand, within gpA1at 1875.545 kb on + strand, within gpA1at 1875.545 kb on + strand, within gpA1at 1875.546 kb on - strand, within gpA1at 1875.546 kb on - strand, within gpA1at 1875.575 kb on + strand, within gpA1at 1875.575 kb on + strand, within gpA1at 1875.575 kb on + strand, within gpA1at 1875.576 kb on - strand, within gpA1at 1875.576 kb on - strand, within gpA1at 1875.577 kb on + strand, within gpA1at 1875.653 kb on - strand, within gpA1at 1875.706 kb on + strand, within gpA1at 1875.706 kb on + strand, within gpA1at 1875.707 kb on - strand, within gpA1at 1875.707 kb on - strand, within gpA1at 1875.822 kb on - strand, within gpA1at 1875.833 kb on + strand, within gpA1at 1875.834 kb on - strand, within gpA1at 1875.876 kb on - strand, within gpA1at 1875.876 kb on - strand, within gpA1at 1875.895 kb on + strand, within gpA1at 1875.895 kb on + strand, within gpA1at 1875.896 kb on - strand, within gpA1at 1875.918 kb on - strand, within gpA1at 1875.918 kb on - strand, within gpA1at 1875.920 kb on - strand, within gpA1at 1875.920 kb on - strand, within gpA1at 1875.939 kb on - strand, within gpA1at 1875.968 kb on - strand, within gpA1at 1875.994 kb on + strand, within gpA1at 1875.995 kb on - strand, within gpA1at 1876.148 kb on - strand, within gpA1at 1876.176 kb on - strand, within gpA1at 1876.206 kb on + strandat 1876.206 kb on + strandat 1876.206 kb on + strandat 1876.207 kb on - strandat 1876.207 kb on - strandat 1876.253 kb on + strandat 1876.253 kb on + strandat 1876.258 kb on + strandat 1876.258 kb on + strandat 1876.258 kb on + strandat 1876.258 kb on + strandat 1876.259 kb on - strandat 1876.259 kb on - strandat 1876.259 kb on - strandat 1876.316 kb on + strandat 1876.316 kb on + strandat 1876.316 kb on + strandat 1876.317 kb on - strandat 1876.317 kb on - strandat 1876.318 kb on + strandat 1876.318 kb on + strandat 1876.319 kb on - strandat 1876.370 kb on - strandat 1876.416 kb on + strandat 1876.417 kb on - strandat 1876.430 kb on + strandat 1876.498 kb on + strand, within MCAODC_25760at 1876.661 kb on - strand, within MCAODC_25760at 1876.661 kb on - strand, within MCAODC_25760at 1876.775 kb on + strand, within MCAODC_25760at 1876.775 kb on + strand, within MCAODC_25760at 1876.854 kb on - strand, within MCAODC_25760at 1876.871 kb on - strandat 1876.906 kb on + strandat 1876.906 kb on + strandat 1876.907 kb on - strandat 1876.907 kb on - strandat 1877.066 kb on + strandat 1877.374 kb on + strandat 1877.386 kb on - strandat 1877.396 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,873,493 - MCAODC_25745 0.42 +0.2
1,873,493 - MCAODC_25745 0.42 +0.3
1,873,493 - MCAODC_25745 0.42 -1.0
1,873,493 - MCAODC_25745 0.42 -3.9
1,873,640 + MCAODC_25745 0.56 -1.2
1,873,641 - MCAODC_25745 0.56 +0.2
1,873,776 - MCAODC_25745 0.69 +0.4
1,873,815 - MCAODC_25745 0.72 -0.4
1,873,837 + MCAODC_25745 0.75 -1.2
1,873,880 + MCAODC_25745 0.79 +2.2
1,873,880 + MCAODC_25745 0.79 +0.8
1,873,931 + MCAODC_25745 0.83 -1.7
1,874,019 + -0.0
1,874,020 - +0.8
1,874,149 - MCAODC_25750 0.21 +0.9
1,874,149 - MCAODC_25750 0.21 +0.2
1,874,277 + MCAODC_25750 0.81 +1.0
1,874,278 - MCAODC_25750 0.82 +0.2
1,874,278 - MCAODC_25750 0.82 -1.7
1,874,359 - -3.0
1,874,530 + gpA1 MCAODC_25755 0.10 -0.0
1,874,531 + gpA1 MCAODC_25755 0.10 +0.1
1,874,605 + gpA1 MCAODC_25755 0.14 +0.1
1,874,606 - gpA1 MCAODC_25755 0.14 -0.0
1,874,606 - gpA1 MCAODC_25755 0.14 +0.7
1,874,606 - gpA1 MCAODC_25755 0.14 -1.2
1,874,657 - gpA1 MCAODC_25755 0.16 +0.2
1,874,657 - gpA1 MCAODC_25755 0.16 +0.7
1,874,792 + gpA1 MCAODC_25755 0.23 -0.0
1,874,793 - gpA1 MCAODC_25755 0.23 -0.2
1,874,793 - gpA1 MCAODC_25755 0.23 +1.4
1,874,840 - gpA1 MCAODC_25755 0.25 -2.6
1,874,843 + gpA1 MCAODC_25755 0.25 -2.4
1,874,843 + gpA1 MCAODC_25755 0.25 -2.4
1,874,844 - gpA1 MCAODC_25755 0.25 -3.1
1,874,850 - gpA1 MCAODC_25755 0.26 +0.3
1,874,850 - gpA1 MCAODC_25755 0.26 +0.6
1,874,850 - gpA1 MCAODC_25755 0.26 +0.5
1,874,885 + gpA1 MCAODC_25755 0.27 -1.3
1,874,894 + gpA1 MCAODC_25755 0.28 +0.2
1,874,894 + gpA1 MCAODC_25755 0.28 +0.3
1,874,894 + gpA1 MCAODC_25755 0.28 -0.2
1,875,092 - gpA1 MCAODC_25755 0.37 +1.0
1,875,092 - gpA1 MCAODC_25755 0.37 +1.1
1,875,102 - gpA1 MCAODC_25755 0.38 -0.1
1,875,128 - gpA1 MCAODC_25755 0.39 +0.9
1,875,289 + gpA1 MCAODC_25755 0.46 +1.1
1,875,294 + gpA1 MCAODC_25755 0.47 -1.5
1,875,294 + gpA1 MCAODC_25755 0.47 -0.6
1,875,295 - gpA1 MCAODC_25755 0.47 -1.8
1,875,295 - gpA1 MCAODC_25755 0.47 -0.8
1,875,353 - gpA1 MCAODC_25755 0.49 -0.1
1,875,353 - gpA1 MCAODC_25755 0.49 +0.4
1,875,440 + gpA1 MCAODC_25755 0.54 -1.7
1,875,440 + gpA1 MCAODC_25755 0.54 +0.4
1,875,441 - gpA1 MCAODC_25755 0.54 +0.6
1,875,471 - gpA1 MCAODC_25755 0.55 +2.5
1,875,545 + gpA1 MCAODC_25755 0.59 +0.8
1,875,545 + gpA1 MCAODC_25755 0.59 -3.0
1,875,546 - gpA1 MCAODC_25755 0.59 -1.2
1,875,546 - gpA1 MCAODC_25755 0.59 +0.5
1,875,575 + gpA1 MCAODC_25755 0.60 +1.0
1,875,575 + gpA1 MCAODC_25755 0.60 +1.5
1,875,575 + gpA1 MCAODC_25755 0.60 -1.1
1,875,576 - gpA1 MCAODC_25755 0.60 +0.7
1,875,576 - gpA1 MCAODC_25755 0.60 +0.2
1,875,577 + gpA1 MCAODC_25755 0.60 +0.2
1,875,653 - gpA1 MCAODC_25755 0.64 -1.2
1,875,706 + gpA1 MCAODC_25755 0.66 +0.1
1,875,706 + gpA1 MCAODC_25755 0.66 -2.5
1,875,707 - gpA1 MCAODC_25755 0.66 -0.6
1,875,707 - gpA1 MCAODC_25755 0.66 -2.1
1,875,822 - gpA1 MCAODC_25755 0.72 -3.2
1,875,833 + gpA1 MCAODC_25755 0.72 -0.2
1,875,834 - gpA1 MCAODC_25755 0.72 -1.3
1,875,876 - gpA1 MCAODC_25755 0.74 +2.8
1,875,876 - gpA1 MCAODC_25755 0.74 +0.9
1,875,895 + gpA1 MCAODC_25755 0.75 +2.5
1,875,895 + gpA1 MCAODC_25755 0.75 +1.4
1,875,896 - gpA1 MCAODC_25755 0.75 -2.4
1,875,918 - gpA1 MCAODC_25755 0.76 +0.8
1,875,918 - gpA1 MCAODC_25755 0.76 -0.3
1,875,920 - gpA1 MCAODC_25755 0.76 +0.6
1,875,920 - gpA1 MCAODC_25755 0.76 +0.3
1,875,939 - gpA1 MCAODC_25755 0.77 +0.3
1,875,968 - gpA1 MCAODC_25755 0.79 -0.3
1,875,994 + gpA1 MCAODC_25755 0.80 -1.9
1,875,995 - gpA1 MCAODC_25755 0.80 +1.2
1,876,148 - gpA1 MCAODC_25755 0.87 +0.8
1,876,176 - gpA1 MCAODC_25755 0.89 -3.8
1,876,206 + -0.8
1,876,206 + -2.5
1,876,206 + -0.6
1,876,207 - +0.2
1,876,207 - +0.3
1,876,253 + +0.2
1,876,253 + -0.2
1,876,258 + -2.2
1,876,258 + -0.4
1,876,258 + +1.4
1,876,258 + -1.5
1,876,259 - -0.1
1,876,259 - -0.3
1,876,259 - -1.3
1,876,316 + -2.6
1,876,316 + -0.3
1,876,316 + -1.4
1,876,317 - +0.4
1,876,317 - +0.1
1,876,318 + -1.2
1,876,318 + -2.0
1,876,319 - -0.4
1,876,370 - -0.4
1,876,416 + +0.1
1,876,417 - +1.2
1,876,430 + +0.8
1,876,498 + MCAODC_25760 0.17 -0.3
1,876,661 - MCAODC_25760 0.50 +1.3
1,876,661 - MCAODC_25760 0.50 -1.3
1,876,775 + MCAODC_25760 0.73 -1.5
1,876,775 + MCAODC_25760 0.73 -0.4
1,876,854 - MCAODC_25760 0.89 -0.1
1,876,871 - +0.7
1,876,906 + +0.1
1,876,906 + +1.1
1,876,907 - +0.6
1,876,907 - +0.2
1,877,066 + -3.3
1,877,374 + +0.5
1,877,386 - -0.1
1,877,396 + -1.6

Or see this region's nucleotide sequence