Strain Fitness in Escherichia coli ECRC101 around MCAODC_24990

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaat and infA are separated by 284 nucleotidesinfA and Ser_trna are separated by 253 nucleotidesSer_trna and clpA are separated by 345 nucleotides MCAODC_24985: aat - leucyl/phenylalanyl-tRNA--protein transferase, at 1,722,203 to 1,722,907 aat MCAODC_24990: infA - translation initiation factor IF-1, at 1,723,192 to 1,723,410 infA MCAODC_24995: Ser_trna - tRNA-Ser(gga), at 1,723,664 to 1,723,751 _trna MCAODC_25000: clpA - ATP-dependent Clp protease ATP-binding subunit ClpA, at 1,724,097 to 1,726,373 clpA Position (kb) 1723 1724Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1722.234 kb on + strandat 1722.261 kb on + strandat 1722.262 kb on - strandat 1722.319 kb on - strand, within aatat 1722.338 kb on - strand, within aatat 1722.402 kb on + strand, within aatat 1722.403 kb on - strand, within aatat 1722.421 kb on + strand, within aatat 1722.430 kb on + strand, within aatat 1722.431 kb on - strand, within aatat 1722.431 kb on - strand, within aatat 1722.433 kb on + strand, within aatat 1722.433 kb on + strand, within aatat 1722.433 kb on + strand, within aatat 1722.448 kb on + strand, within aatat 1722.479 kb on + strand, within aatat 1722.480 kb on - strand, within aatat 1722.632 kb on - strand, within aatat 1722.635 kb on + strand, within aatat 1722.635 kb on + strand, within aatat 1722.635 kb on + strand, within aatat 1722.636 kb on - strand, within aatat 1722.657 kb on + strand, within aatat 1722.657 kb on + strand, within aatat 1722.657 kb on + strand, within aatat 1722.718 kb on - strand, within aatat 1722.821 kb on + strand, within aatat 1722.826 kb on + strand, within aatat 1722.827 kb on - strand, within aatat 1722.827 kb on - strand, within aatat 1722.831 kb on - strand, within aatat 1722.940 kb on + strandat 1722.940 kb on + strandat 1722.941 kb on - strandat 1723.036 kb on + strandat 1723.038 kb on + strandat 1723.038 kb on + strandat 1723.039 kb on - strandat 1723.448 kb on + strandat 1723.448 kb on + strandat 1723.474 kb on + strandat 1723.496 kb on - strandat 1723.496 kb on - strandat 1723.535 kb on + strandat 1723.536 kb on - strandat 1723.536 kb on - strandat 1723.536 kb on - strandat 1723.536 kb on - strandat 1723.537 kb on + strandat 1723.537 kb on + strandat 1723.554 kb on - strandat 1723.582 kb on - strandat 1723.615 kb on + strandat 1723.617 kb on + strandat 1723.617 kb on + strandat 1723.617 kb on + strandat 1723.720 kb on + strand, within Ser_trnaat 1723.841 kb on - strandat 1723.841 kb on - strandat 1723.846 kb on - strandat 1723.846 kb on - strandat 1723.953 kb on + strandat 1723.977 kb on + strandat 1724.034 kb on + strandat 1724.039 kb on - strandat 1724.082 kb on + strandat 1724.083 kb on - strandat 1724.098 kb on + strandat 1724.143 kb on + strandat 1724.144 kb on - strandat 1724.385 kb on - strand, within clpAat 1724.385 kb on - strand, within clpAat 1724.385 kb on - strand, within clpA

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,722,234 + +0.7
1,722,261 + +1.2
1,722,262 - +1.6
1,722,319 - aat MCAODC_24985 0.16 -1.2
1,722,338 - aat MCAODC_24985 0.19 +0.5
1,722,402 + aat MCAODC_24985 0.28 -0.4
1,722,403 - aat MCAODC_24985 0.28 -1.0
1,722,421 + aat MCAODC_24985 0.31 +0.6
1,722,430 + aat MCAODC_24985 0.32 +0.5
1,722,431 - aat MCAODC_24985 0.32 -0.6
1,722,431 - aat MCAODC_24985 0.32 +1.0
1,722,433 + aat MCAODC_24985 0.33 -1.6
1,722,433 + aat MCAODC_24985 0.33 +1.6
1,722,433 + aat MCAODC_24985 0.33 -1.2
1,722,448 + aat MCAODC_24985 0.35 -1.5
1,722,479 + aat MCAODC_24985 0.39 -0.2
1,722,480 - aat MCAODC_24985 0.39 +1.4
1,722,632 - aat MCAODC_24985 0.61 -0.1
1,722,635 + aat MCAODC_24985 0.61 -0.3
1,722,635 + aat MCAODC_24985 0.61 +0.9
1,722,635 + aat MCAODC_24985 0.61 -2.3
1,722,636 - aat MCAODC_24985 0.61 +3.0
1,722,657 + aat MCAODC_24985 0.64 +0.3
1,722,657 + aat MCAODC_24985 0.64 -0.2
1,722,657 + aat MCAODC_24985 0.64 +1.0
1,722,718 - aat MCAODC_24985 0.73 +2.1
1,722,821 + aat MCAODC_24985 0.88 -1.7
1,722,826 + aat MCAODC_24985 0.88 -1.8
1,722,827 - aat MCAODC_24985 0.89 +0.7
1,722,827 - aat MCAODC_24985 0.89 -1.8
1,722,831 - aat MCAODC_24985 0.89 -0.2
1,722,940 + +2.9
1,722,940 + -0.3
1,722,941 - +1.5
1,723,036 + -1.2
1,723,038 + -0.9
1,723,038 + -2.6
1,723,039 - -1.3
1,723,448 + -1.6
1,723,448 + +1.2
1,723,474 + +0.6
1,723,496 - +0.7
1,723,496 - -1.9
1,723,535 + -1.9
1,723,536 - -4.7
1,723,536 - -0.5
1,723,536 - -1.1
1,723,536 - -1.0
1,723,537 + +1.4
1,723,537 + +0.1
1,723,554 - -0.4
1,723,582 - +0.5
1,723,615 + -0.7
1,723,617 + +1.7
1,723,617 + +2.7
1,723,617 + +0.5
1,723,720 + Ser_trna MCAODC_24995 0.64 -1.3
1,723,841 - +0.0
1,723,841 - +1.9
1,723,846 - -0.3
1,723,846 - +0.9
1,723,953 + -1.8
1,723,977 + +0.4
1,724,034 + +2.0
1,724,039 - -1.4
1,724,082 + -1.2
1,724,083 - +1.8
1,724,098 + -0.8
1,724,143 + +1.3
1,724,144 - -3.2
1,724,385 - clpA MCAODC_25000 0.13 +0.3
1,724,385 - clpA MCAODC_25000 0.13 +0.3
1,724,385 - clpA MCAODC_25000 0.13 -0.8

Or see this region's nucleotide sequence