Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aat and infA are separated by 284 nucleotides infA and Ser_trna are separated by 253 nucleotides Ser_trna and clpA are separated by 345 nucleotides
MCAODC_24985: aat - leucyl/phenylalanyl-tRNA--protein transferase, at 1,722,203 to 1,722,907
aat
MCAODC_24990: infA - translation initiation factor IF-1, at 1,723,192 to 1,723,410
infA
MCAODC_24995: Ser_trna - tRNA-Ser(gga), at 1,723,664 to 1,723,751
_trna
MCAODC_25000: clpA - ATP-dependent Clp protease ATP-binding subunit ClpA, at 1,724,097 to 1,726,373
clpA
Position (kb)
1723
1724 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1722.234 kb on + strand at 1722.261 kb on + strand at 1722.262 kb on - strand at 1722.319 kb on - strand, within aat at 1722.338 kb on - strand, within aat at 1722.402 kb on + strand, within aat at 1722.403 kb on - strand, within aat at 1722.421 kb on + strand, within aat at 1722.430 kb on + strand, within aat at 1722.431 kb on - strand, within aat at 1722.431 kb on - strand, within aat at 1722.433 kb on + strand, within aat at 1722.433 kb on + strand, within aat at 1722.433 kb on + strand, within aat at 1722.448 kb on + strand, within aat at 1722.479 kb on + strand, within aat at 1722.480 kb on - strand, within aat at 1722.632 kb on - strand, within aat at 1722.635 kb on + strand, within aat at 1722.635 kb on + strand, within aat at 1722.635 kb on + strand, within aat at 1722.636 kb on - strand, within aat at 1722.657 kb on + strand, within aat at 1722.657 kb on + strand, within aat at 1722.657 kb on + strand, within aat at 1722.718 kb on - strand, within aat at 1722.821 kb on + strand, within aat at 1722.826 kb on + strand, within aat at 1722.827 kb on - strand, within aat at 1722.827 kb on - strand, within aat at 1722.831 kb on - strand, within aat at 1722.940 kb on + strand at 1722.940 kb on + strand at 1722.941 kb on - strand at 1723.036 kb on + strand at 1723.038 kb on + strand at 1723.038 kb on + strand at 1723.039 kb on - strand at 1723.448 kb on + strand at 1723.448 kb on + strand at 1723.474 kb on + strand at 1723.496 kb on - strand at 1723.496 kb on - strand at 1723.535 kb on + strand at 1723.536 kb on - strand at 1723.536 kb on - strand at 1723.536 kb on - strand at 1723.536 kb on - strand at 1723.537 kb on + strand at 1723.537 kb on + strand at 1723.554 kb on - strand at 1723.582 kb on - strand at 1723.615 kb on + strand at 1723.617 kb on + strand at 1723.617 kb on + strand at 1723.617 kb on + strand at 1723.720 kb on + strand, within Ser_trna at 1723.841 kb on - strand at 1723.841 kb on - strand at 1723.846 kb on - strand at 1723.846 kb on - strand at 1723.953 kb on + strand at 1723.977 kb on + strand at 1724.034 kb on + strand at 1724.039 kb on - strand at 1724.082 kb on + strand at 1724.083 kb on - strand at 1724.098 kb on + strand at 1724.143 kb on + strand at 1724.144 kb on - strand at 1724.385 kb on - strand, within clpA at 1724.385 kb on - strand, within clpA at 1724.385 kb on - strand, within clpA
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,722,234 + +0.7 1,722,261 + +1.2 1,722,262 - +1.6 1,722,319 - aat MCAODC_24985 0.16 -1.2 1,722,338 - aat MCAODC_24985 0.19 +0.5 1,722,402 + aat MCAODC_24985 0.28 -0.4 1,722,403 - aat MCAODC_24985 0.28 -1.0 1,722,421 + aat MCAODC_24985 0.31 +0.6 1,722,430 + aat MCAODC_24985 0.32 +0.5 1,722,431 - aat MCAODC_24985 0.32 -0.6 1,722,431 - aat MCAODC_24985 0.32 +1.0 1,722,433 + aat MCAODC_24985 0.33 -1.6 1,722,433 + aat MCAODC_24985 0.33 +1.6 1,722,433 + aat MCAODC_24985 0.33 -1.2 1,722,448 + aat MCAODC_24985 0.35 -1.5 1,722,479 + aat MCAODC_24985 0.39 -0.2 1,722,480 - aat MCAODC_24985 0.39 +1.4 1,722,632 - aat MCAODC_24985 0.61 -0.1 1,722,635 + aat MCAODC_24985 0.61 -0.3 1,722,635 + aat MCAODC_24985 0.61 +0.9 1,722,635 + aat MCAODC_24985 0.61 -2.3 1,722,636 - aat MCAODC_24985 0.61 +3.0 1,722,657 + aat MCAODC_24985 0.64 +0.3 1,722,657 + aat MCAODC_24985 0.64 -0.2 1,722,657 + aat MCAODC_24985 0.64 +1.0 1,722,718 - aat MCAODC_24985 0.73 +2.1 1,722,821 + aat MCAODC_24985 0.88 -1.7 1,722,826 + aat MCAODC_24985 0.88 -1.8 1,722,827 - aat MCAODC_24985 0.89 +0.7 1,722,827 - aat MCAODC_24985 0.89 -1.8 1,722,831 - aat MCAODC_24985 0.89 -0.2 1,722,940 + +2.9 1,722,940 + -0.3 1,722,941 - +1.5 1,723,036 + -1.2 1,723,038 + -0.9 1,723,038 + -2.6 1,723,039 - -1.3 1,723,448 + -1.6 1,723,448 + +1.2 1,723,474 + +0.6 1,723,496 - +0.7 1,723,496 - -1.9 1,723,535 + -1.9 1,723,536 - -4.7 1,723,536 - -0.5 1,723,536 - -1.1 1,723,536 - -1.0 1,723,537 + +1.4 1,723,537 + +0.1 1,723,554 - -0.4 1,723,582 - +0.5 1,723,615 + -0.7 1,723,617 + +1.7 1,723,617 + +2.7 1,723,617 + +0.5 1,723,720 + Ser_trna MCAODC_24995 0.64 -1.3 1,723,841 - +0.0 1,723,841 - +1.9 1,723,846 - -0.3 1,723,846 - +0.9 1,723,953 + -1.8 1,723,977 + +0.4 1,724,034 + +2.0 1,724,039 - -1.4 1,724,082 + -1.2 1,724,083 - +1.8 1,724,098 + -0.8 1,724,143 + +1.3 1,724,144 - -3.2 1,724,385 - clpA MCAODC_25000 0.13 +0.3 1,724,385 - clpA MCAODC_25000 0.13 +0.3 1,724,385 - clpA MCAODC_25000 0.13 -0.8
Or see this region's nucleotide sequence