Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fimB and ycdU are separated by 366 nucleotides ycdU and ymdE overlap by 4 nucleotides ymdE and MCAODC_23765 are separated by 13 nucleotides
MCAODC_23750: fimB - integrase, at 1,469,958 to 1,471,160
fimB
MCAODC_23755: ycdU - Uncharacterized protein YcdU, at 1,471,527 to 1,472,513
ycdU
MCAODC_23760: ymdE - Putative uncharacterized protein YmdE, at 1,472,510 to 1,473,451
ymdE
MCAODC_23765: MCAODC_23765 - hypothetical protein, at 1,473,465 to 1,474,853
_23765
Position (kb)
1471
1472
1473 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1470.636 kb on - strand, within fimB at 1470.766 kb on + strand, within fimB at 1470.795 kb on + strand, within fimB at 1470.795 kb on + strand, within fimB at 1470.795 kb on + strand, within fimB at 1470.795 kb on + strand, within fimB at 1470.796 kb on - strand, within fimB at 1470.796 kb on - strand, within fimB at 1470.796 kb on - strand, within fimB at 1470.796 kb on - strand, within fimB at 1470.838 kb on - strand, within fimB at 1470.838 kb on - strand, within fimB at 1470.838 kb on - strand, within fimB at 1470.950 kb on + strand, within fimB at 1470.951 kb on - strand, within fimB at 1471.001 kb on + strand, within fimB at 1471.001 kb on + strand, within fimB at 1471.001 kb on + strand, within fimB at 1471.001 kb on + strand, within fimB at 1471.002 kb on - strand, within fimB at 1471.027 kb on - strand, within fimB at 1471.027 kb on - strand, within fimB at 1471.031 kb on - strand, within fimB at 1471.128 kb on - strand at 1471.203 kb on + strand at 1471.494 kb on - strand at 1471.494 kb on - strand at 1471.496 kb on - strand at 1471.496 kb on - strand at 1471.575 kb on - strand at 1471.630 kb on - strand, within ycdU at 1471.634 kb on - strand, within ycdU at 1471.738 kb on - strand, within ycdU at 1472.154 kb on + strand, within ycdU at 1472.164 kb on - strand, within ycdU at 1472.459 kb on - strand at 1472.694 kb on - strand, within ymdE at 1472.719 kb on + strand, within ymdE at 1472.719 kb on + strand, within ymdE at 1472.938 kb on + strand, within ymdE at 1472.968 kb on + strand, within ymdE at 1472.968 kb on + strand, within ymdE at 1472.969 kb on - strand, within ymdE at 1473.053 kb on - strand, within ymdE at 1473.139 kb on - strand, within ymdE at 1473.217 kb on + strand, within ymdE at 1473.220 kb on - strand, within ymdE at 1473.220 kb on - strand, within ymdE at 1473.232 kb on + strand, within ymdE at 1473.272 kb on - strand, within ymdE at 1473.356 kb on - strand, within ymdE at 1473.466 kb on + strand at 1473.468 kb on + strand at 1473.468 kb on + strand at 1473.468 kb on + strand at 1473.468 kb on + strand at 1473.468 kb on + strand at 1473.468 kb on + strand at 1473.469 kb on - strand at 1473.469 kb on - strand at 1473.469 kb on - strand at 1473.469 kb on - strand at 1473.469 kb on - strand at 1473.473 kb on - strand at 1473.475 kb on + strand at 1473.476 kb on - strand at 1473.476 kb on - strand at 1473.476 kb on - strand at 1473.490 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,470,636 - fimB MCAODC_23750 0.56 +0.9 1,470,766 + fimB MCAODC_23750 0.67 +2.7 1,470,795 + fimB MCAODC_23750 0.70 -0.3 1,470,795 + fimB MCAODC_23750 0.70 +1.9 1,470,795 + fimB MCAODC_23750 0.70 +0.9 1,470,795 + fimB MCAODC_23750 0.70 +0.1 1,470,796 - fimB MCAODC_23750 0.70 -0.2 1,470,796 - fimB MCAODC_23750 0.70 +0.2 1,470,796 - fimB MCAODC_23750 0.70 -0.2 1,470,796 - fimB MCAODC_23750 0.70 +1.1 1,470,838 - fimB MCAODC_23750 0.73 +2.2 1,470,838 - fimB MCAODC_23750 0.73 -1.6 1,470,838 - fimB MCAODC_23750 0.73 +0.1 1,470,950 + fimB MCAODC_23750 0.82 +0.2 1,470,951 - fimB MCAODC_23750 0.83 +0.5 1,471,001 + fimB MCAODC_23750 0.87 -0.1 1,471,001 + fimB MCAODC_23750 0.87 +0.8 1,471,001 + fimB MCAODC_23750 0.87 +0.1 1,471,001 + fimB MCAODC_23750 0.87 +0.9 1,471,002 - fimB MCAODC_23750 0.87 +0.2 1,471,027 - fimB MCAODC_23750 0.89 +0.4 1,471,027 - fimB MCAODC_23750 0.89 +0.4 1,471,031 - fimB MCAODC_23750 0.89 -0.8 1,471,128 - +0.5 1,471,203 + -0.2 1,471,494 - +0.7 1,471,494 - -0.1 1,471,496 - +0.1 1,471,496 - -1.5 1,471,575 - -0.7 1,471,630 - ycdU MCAODC_23755 0.10 -0.6 1,471,634 - ycdU MCAODC_23755 0.11 -1.1 1,471,738 - ycdU MCAODC_23755 0.21 -0.1 1,472,154 + ycdU MCAODC_23755 0.64 -0.6 1,472,164 - ycdU MCAODC_23755 0.65 -1.0 1,472,459 - +2.1 1,472,694 - ymdE MCAODC_23760 0.20 +0.9 1,472,719 + ymdE MCAODC_23760 0.22 -1.9 1,472,719 + ymdE MCAODC_23760 0.22 +0.1 1,472,938 + ymdE MCAODC_23760 0.45 +0.0 1,472,968 + ymdE MCAODC_23760 0.49 +0.9 1,472,968 + ymdE MCAODC_23760 0.49 -2.5 1,472,969 - ymdE MCAODC_23760 0.49 +1.5 1,473,053 - ymdE MCAODC_23760 0.58 +0.5 1,473,139 - ymdE MCAODC_23760 0.67 -0.8 1,473,217 + ymdE MCAODC_23760 0.75 +0.1 1,473,220 - ymdE MCAODC_23760 0.75 +0.0 1,473,220 - ymdE MCAODC_23760 0.75 +0.3 1,473,232 + ymdE MCAODC_23760 0.77 -3.0 1,473,272 - ymdE MCAODC_23760 0.81 -2.0 1,473,356 - ymdE MCAODC_23760 0.90 -0.0 1,473,466 + +1.0 1,473,468 + -0.2 1,473,468 + +0.6 1,473,468 + +1.5 1,473,468 + -0.7 1,473,468 + -0.2 1,473,468 + -0.3 1,473,469 - -1.0 1,473,469 - -0.5 1,473,469 - -0.2 1,473,469 - -1.9 1,473,469 - +1.7 1,473,473 - +1.4 1,473,475 + -0.9 1,473,476 - -1.2 1,473,476 - -0.2 1,473,476 - +0.2 1,473,490 + +0.3
Or see this region's nucleotide sequence