Strain Fitness in Escherichia coli ECRC101 around MCAODC_23755

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfimB and ycdU are separated by 366 nucleotidesycdU and ymdE overlap by 4 nucleotidesymdE and MCAODC_23765 are separated by 13 nucleotides MCAODC_23750: fimB - integrase, at 1,469,958 to 1,471,160 fimB MCAODC_23755: ycdU - Uncharacterized protein YcdU, at 1,471,527 to 1,472,513 ycdU MCAODC_23760: ymdE - Putative uncharacterized protein YmdE, at 1,472,510 to 1,473,451 ymdE MCAODC_23765: MCAODC_23765 - hypothetical protein, at 1,473,465 to 1,474,853 _23765 Position (kb) 1471 1472 1473Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1470.636 kb on - strand, within fimBat 1470.766 kb on + strand, within fimBat 1470.795 kb on + strand, within fimBat 1470.795 kb on + strand, within fimBat 1470.795 kb on + strand, within fimBat 1470.795 kb on + strand, within fimBat 1470.796 kb on - strand, within fimBat 1470.796 kb on - strand, within fimBat 1470.796 kb on - strand, within fimBat 1470.796 kb on - strand, within fimBat 1470.838 kb on - strand, within fimBat 1470.838 kb on - strand, within fimBat 1470.838 kb on - strand, within fimBat 1470.950 kb on + strand, within fimBat 1470.951 kb on - strand, within fimBat 1471.001 kb on + strand, within fimBat 1471.001 kb on + strand, within fimBat 1471.001 kb on + strand, within fimBat 1471.001 kb on + strand, within fimBat 1471.002 kb on - strand, within fimBat 1471.027 kb on - strand, within fimBat 1471.027 kb on - strand, within fimBat 1471.031 kb on - strand, within fimBat 1471.128 kb on - strandat 1471.203 kb on + strandat 1471.494 kb on - strandat 1471.494 kb on - strandat 1471.496 kb on - strandat 1471.496 kb on - strandat 1471.575 kb on - strandat 1471.630 kb on - strand, within ycdUat 1471.634 kb on - strand, within ycdUat 1471.738 kb on - strand, within ycdUat 1472.154 kb on + strand, within ycdUat 1472.164 kb on - strand, within ycdUat 1472.459 kb on - strandat 1472.694 kb on - strand, within ymdEat 1472.719 kb on + strand, within ymdEat 1472.719 kb on + strand, within ymdEat 1472.938 kb on + strand, within ymdEat 1472.968 kb on + strand, within ymdEat 1472.968 kb on + strand, within ymdEat 1472.969 kb on - strand, within ymdEat 1473.053 kb on - strand, within ymdEat 1473.139 kb on - strand, within ymdEat 1473.217 kb on + strand, within ymdEat 1473.220 kb on - strand, within ymdEat 1473.220 kb on - strand, within ymdEat 1473.232 kb on + strand, within ymdEat 1473.272 kb on - strand, within ymdEat 1473.356 kb on - strand, within ymdEat 1473.466 kb on + strandat 1473.468 kb on + strandat 1473.468 kb on + strandat 1473.468 kb on + strandat 1473.468 kb on + strandat 1473.468 kb on + strandat 1473.468 kb on + strandat 1473.469 kb on - strandat 1473.469 kb on - strandat 1473.469 kb on - strandat 1473.469 kb on - strandat 1473.469 kb on - strandat 1473.473 kb on - strandat 1473.475 kb on + strandat 1473.476 kb on - strandat 1473.476 kb on - strandat 1473.476 kb on - strandat 1473.490 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,470,636 - fimB MCAODC_23750 0.56 +0.9
1,470,766 + fimB MCAODC_23750 0.67 +2.7
1,470,795 + fimB MCAODC_23750 0.70 -0.3
1,470,795 + fimB MCAODC_23750 0.70 +1.9
1,470,795 + fimB MCAODC_23750 0.70 +0.9
1,470,795 + fimB MCAODC_23750 0.70 +0.1
1,470,796 - fimB MCAODC_23750 0.70 -0.2
1,470,796 - fimB MCAODC_23750 0.70 +0.2
1,470,796 - fimB MCAODC_23750 0.70 -0.2
1,470,796 - fimB MCAODC_23750 0.70 +1.1
1,470,838 - fimB MCAODC_23750 0.73 +2.2
1,470,838 - fimB MCAODC_23750 0.73 -1.6
1,470,838 - fimB MCAODC_23750 0.73 +0.1
1,470,950 + fimB MCAODC_23750 0.82 +0.2
1,470,951 - fimB MCAODC_23750 0.83 +0.5
1,471,001 + fimB MCAODC_23750 0.87 -0.1
1,471,001 + fimB MCAODC_23750 0.87 +0.8
1,471,001 + fimB MCAODC_23750 0.87 +0.1
1,471,001 + fimB MCAODC_23750 0.87 +0.9
1,471,002 - fimB MCAODC_23750 0.87 +0.2
1,471,027 - fimB MCAODC_23750 0.89 +0.4
1,471,027 - fimB MCAODC_23750 0.89 +0.4
1,471,031 - fimB MCAODC_23750 0.89 -0.8
1,471,128 - +0.5
1,471,203 + -0.2
1,471,494 - +0.7
1,471,494 - -0.1
1,471,496 - +0.1
1,471,496 - -1.5
1,471,575 - -0.7
1,471,630 - ycdU MCAODC_23755 0.10 -0.6
1,471,634 - ycdU MCAODC_23755 0.11 -1.1
1,471,738 - ycdU MCAODC_23755 0.21 -0.1
1,472,154 + ycdU MCAODC_23755 0.64 -0.6
1,472,164 - ycdU MCAODC_23755 0.65 -1.0
1,472,459 - +2.1
1,472,694 - ymdE MCAODC_23760 0.20 +0.9
1,472,719 + ymdE MCAODC_23760 0.22 -1.9
1,472,719 + ymdE MCAODC_23760 0.22 +0.1
1,472,938 + ymdE MCAODC_23760 0.45 +0.0
1,472,968 + ymdE MCAODC_23760 0.49 +0.9
1,472,968 + ymdE MCAODC_23760 0.49 -2.5
1,472,969 - ymdE MCAODC_23760 0.49 +1.5
1,473,053 - ymdE MCAODC_23760 0.58 +0.5
1,473,139 - ymdE MCAODC_23760 0.67 -0.8
1,473,217 + ymdE MCAODC_23760 0.75 +0.1
1,473,220 - ymdE MCAODC_23760 0.75 +0.0
1,473,220 - ymdE MCAODC_23760 0.75 +0.3
1,473,232 + ymdE MCAODC_23760 0.77 -3.0
1,473,272 - ymdE MCAODC_23760 0.81 -2.0
1,473,356 - ymdE MCAODC_23760 0.90 -0.0
1,473,466 + +1.0
1,473,468 + -0.2
1,473,468 + +0.6
1,473,468 + +1.5
1,473,468 + -0.7
1,473,468 + -0.2
1,473,468 + -0.3
1,473,469 - -1.0
1,473,469 - -0.5
1,473,469 - -0.2
1,473,469 - -1.9
1,473,469 - +1.7
1,473,473 - +1.4
1,473,475 + -0.9
1,473,476 - -1.2
1,473,476 - -0.2
1,473,476 - +0.2
1,473,490 + +0.3

Or see this region's nucleotide sequence