Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_23745 and fimB are separated by 186 nucleotides
MCAODC_23745: MCAODC_23745 - Membrane protein, at 1,467,954 to 1,469,771
_23745
MCAODC_23750: fimB - integrase, at 1,469,958 to 1,471,160
fimB
Position (kb)
1467
1468
1469
1470 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1467.069 kb on + strand at 1467.069 kb on + strand at 1467.072 kb on + strand at 1467.072 kb on + strand at 1467.072 kb on + strand at 1467.073 kb on - strand at 1467.127 kb on - strand at 1467.127 kb on - strand at 1467.208 kb on - strand at 1467.228 kb on - strand at 1467.249 kb on - strand at 1467.251 kb on - strand at 1467.273 kb on + strand at 1467.377 kb on + strand at 1467.378 kb on - strand at 1467.379 kb on + strand at 1467.480 kb on + strand at 1467.480 kb on + strand at 1467.487 kb on - strand at 1467.491 kb on + strand at 1467.491 kb on + strand at 1467.633 kb on + strand at 1467.715 kb on + strand at 1467.718 kb on - strand at 1467.738 kb on + strand at 1467.740 kb on + strand at 1467.740 kb on + strand at 1467.741 kb on - strand at 1467.745 kb on + strand at 1467.758 kb on - strand at 1467.758 kb on - strand at 1467.781 kb on + strand at 1467.840 kb on - strand at 1468.971 kb on + strand, within MCAODC_23745 at 1469.532 kb on - strand, within MCAODC_23745 at 1469.959 kb on + strand at 1470.012 kb on + strand at 1470.072 kb on - strand at 1470.120 kb on - strand, within fimB at 1470.197 kb on + strand, within fimB at 1470.282 kb on + strand, within fimB at 1470.360 kb on + strand, within fimB at 1470.362 kb on + strand, within fimB at 1470.435 kb on - strand, within fimB at 1470.435 kb on - strand, within fimB at 1470.450 kb on + strand, within fimB at 1470.450 kb on + strand, within fimB at 1470.470 kb on + strand, within fimB at 1470.470 kb on + strand, within fimB at 1470.470 kb on + strand, within fimB at 1470.470 kb on + strand, within fimB at 1470.471 kb on - strand, within fimB at 1470.471 kb on - strand, within fimB at 1470.471 kb on - strand, within fimB at 1470.471 kb on - strand, within fimB at 1470.471 kb on - strand, within fimB at 1470.471 kb on - strand, within fimB at 1470.473 kb on - strand, within fimB at 1470.486 kb on - strand, within fimB at 1470.487 kb on + strand, within fimB at 1470.487 kb on + strand, within fimB at 1470.488 kb on - strand, within fimB at 1470.636 kb on - strand, within fimB at 1470.766 kb on + strand, within fimB
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,467,069 + -2.1 1,467,069 + +1.1 1,467,072 + -0.3 1,467,072 + -1.5 1,467,072 + +0.6 1,467,073 - -3.0 1,467,127 - +0.9 1,467,127 - -1.0 1,467,208 - -1.7 1,467,228 - -2.0 1,467,249 - -1.7 1,467,251 - +1.1 1,467,273 + -1.1 1,467,377 + +0.2 1,467,378 - -0.3 1,467,379 + -0.2 1,467,480 + +0.5 1,467,480 + +1.4 1,467,487 - +1.5 1,467,491 + -1.3 1,467,491 + +0.7 1,467,633 + -1.4 1,467,715 + +0.9 1,467,718 - +0.6 1,467,738 + +1.3 1,467,740 + -0.1 1,467,740 + +1.8 1,467,741 - +0.4 1,467,745 + +0.2 1,467,758 - +1.9 1,467,758 - +1.0 1,467,781 + +0.5 1,467,840 - -2.4 1,468,971 + MCAODC_23745 0.56 -0.1 1,469,532 - MCAODC_23745 0.87 -4.2 1,469,959 + -0.2 1,470,012 + -2.5 1,470,072 - +1.2 1,470,120 - fimB MCAODC_23750 0.13 +0.5 1,470,197 + fimB MCAODC_23750 0.20 -1.6 1,470,282 + fimB MCAODC_23750 0.27 -3.1 1,470,360 + fimB MCAODC_23750 0.33 -0.7 1,470,362 + fimB MCAODC_23750 0.34 +0.1 1,470,435 - fimB MCAODC_23750 0.40 +0.3 1,470,435 - fimB MCAODC_23750 0.40 +0.9 1,470,450 + fimB MCAODC_23750 0.41 +0.1 1,470,450 + fimB MCAODC_23750 0.41 +0.3 1,470,470 + fimB MCAODC_23750 0.43 -2.7 1,470,470 + fimB MCAODC_23750 0.43 -0.5 1,470,470 + fimB MCAODC_23750 0.43 +0.8 1,470,470 + fimB MCAODC_23750 0.43 -1.7 1,470,471 - fimB MCAODC_23750 0.43 +2.1 1,470,471 - fimB MCAODC_23750 0.43 +0.1 1,470,471 - fimB MCAODC_23750 0.43 -0.7 1,470,471 - fimB MCAODC_23750 0.43 +1.0 1,470,471 - fimB MCAODC_23750 0.43 +1.5 1,470,471 - fimB MCAODC_23750 0.43 -0.2 1,470,473 - fimB MCAODC_23750 0.43 +1.1 1,470,486 - fimB MCAODC_23750 0.44 -1.8 1,470,487 + fimB MCAODC_23750 0.44 -1.3 1,470,487 + fimB MCAODC_23750 0.44 +0.0 1,470,488 - fimB MCAODC_23750 0.44 +0.9 1,470,636 - fimB MCAODC_23750 0.56 +0.9 1,470,766 + fimB MCAODC_23750 0.67 +2.7
Or see this region's nucleotide sequence