Strain Fitness in Escherichia coli ECRC101 around MCAODC_23745

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_23745 and fimB are separated by 186 nucleotides MCAODC_23745: MCAODC_23745 - Membrane protein, at 1,467,954 to 1,469,771 _23745 MCAODC_23750: fimB - integrase, at 1,469,958 to 1,471,160 fimB Position (kb) 1467 1468 1469 1470Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1467.069 kb on + strandat 1467.069 kb on + strandat 1467.072 kb on + strandat 1467.072 kb on + strandat 1467.072 kb on + strandat 1467.073 kb on - strandat 1467.127 kb on - strandat 1467.127 kb on - strandat 1467.208 kb on - strandat 1467.228 kb on - strandat 1467.249 kb on - strandat 1467.251 kb on - strandat 1467.273 kb on + strandat 1467.377 kb on + strandat 1467.378 kb on - strandat 1467.379 kb on + strandat 1467.480 kb on + strandat 1467.480 kb on + strandat 1467.487 kb on - strandat 1467.491 kb on + strandat 1467.491 kb on + strandat 1467.633 kb on + strandat 1467.715 kb on + strandat 1467.718 kb on - strandat 1467.738 kb on + strandat 1467.740 kb on + strandat 1467.740 kb on + strandat 1467.741 kb on - strandat 1467.745 kb on + strandat 1467.758 kb on - strandat 1467.758 kb on - strandat 1467.781 kb on + strandat 1467.840 kb on - strandat 1468.971 kb on + strand, within MCAODC_23745at 1469.532 kb on - strand, within MCAODC_23745at 1469.959 kb on + strandat 1470.012 kb on + strandat 1470.072 kb on - strandat 1470.120 kb on - strand, within fimBat 1470.197 kb on + strand, within fimBat 1470.282 kb on + strand, within fimBat 1470.360 kb on + strand, within fimBat 1470.362 kb on + strand, within fimBat 1470.435 kb on - strand, within fimBat 1470.435 kb on - strand, within fimBat 1470.450 kb on + strand, within fimBat 1470.450 kb on + strand, within fimBat 1470.470 kb on + strand, within fimBat 1470.470 kb on + strand, within fimBat 1470.470 kb on + strand, within fimBat 1470.470 kb on + strand, within fimBat 1470.471 kb on - strand, within fimBat 1470.471 kb on - strand, within fimBat 1470.471 kb on - strand, within fimBat 1470.471 kb on - strand, within fimBat 1470.471 kb on - strand, within fimBat 1470.471 kb on - strand, within fimBat 1470.473 kb on - strand, within fimBat 1470.486 kb on - strand, within fimBat 1470.487 kb on + strand, within fimBat 1470.487 kb on + strand, within fimBat 1470.488 kb on - strand, within fimBat 1470.636 kb on - strand, within fimBat 1470.766 kb on + strand, within fimB

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,467,069 + -2.1
1,467,069 + +1.1
1,467,072 + -0.3
1,467,072 + -1.5
1,467,072 + +0.6
1,467,073 - -3.0
1,467,127 - +0.9
1,467,127 - -1.0
1,467,208 - -1.7
1,467,228 - -2.0
1,467,249 - -1.7
1,467,251 - +1.1
1,467,273 + -1.1
1,467,377 + +0.2
1,467,378 - -0.3
1,467,379 + -0.2
1,467,480 + +0.5
1,467,480 + +1.4
1,467,487 - +1.5
1,467,491 + -1.3
1,467,491 + +0.7
1,467,633 + -1.4
1,467,715 + +0.9
1,467,718 - +0.6
1,467,738 + +1.3
1,467,740 + -0.1
1,467,740 + +1.8
1,467,741 - +0.4
1,467,745 + +0.2
1,467,758 - +1.9
1,467,758 - +1.0
1,467,781 + +0.5
1,467,840 - -2.4
1,468,971 + MCAODC_23745 0.56 -0.1
1,469,532 - MCAODC_23745 0.87 -4.2
1,469,959 + -0.2
1,470,012 + -2.5
1,470,072 - +1.2
1,470,120 - fimB MCAODC_23750 0.13 +0.5
1,470,197 + fimB MCAODC_23750 0.20 -1.6
1,470,282 + fimB MCAODC_23750 0.27 -3.1
1,470,360 + fimB MCAODC_23750 0.33 -0.7
1,470,362 + fimB MCAODC_23750 0.34 +0.1
1,470,435 - fimB MCAODC_23750 0.40 +0.3
1,470,435 - fimB MCAODC_23750 0.40 +0.9
1,470,450 + fimB MCAODC_23750 0.41 +0.1
1,470,450 + fimB MCAODC_23750 0.41 +0.3
1,470,470 + fimB MCAODC_23750 0.43 -2.7
1,470,470 + fimB MCAODC_23750 0.43 -0.5
1,470,470 + fimB MCAODC_23750 0.43 +0.8
1,470,470 + fimB MCAODC_23750 0.43 -1.7
1,470,471 - fimB MCAODC_23750 0.43 +2.1
1,470,471 - fimB MCAODC_23750 0.43 +0.1
1,470,471 - fimB MCAODC_23750 0.43 -0.7
1,470,471 - fimB MCAODC_23750 0.43 +1.0
1,470,471 - fimB MCAODC_23750 0.43 +1.5
1,470,471 - fimB MCAODC_23750 0.43 -0.2
1,470,473 - fimB MCAODC_23750 0.43 +1.1
1,470,486 - fimB MCAODC_23750 0.44 -1.8
1,470,487 + fimB MCAODC_23750 0.44 -1.3
1,470,487 + fimB MCAODC_23750 0.44 +0.0
1,470,488 - fimB MCAODC_23750 0.44 +0.9
1,470,636 - fimB MCAODC_23750 0.56 +0.9
1,470,766 + fimB MCAODC_23750 0.67 +2.7

Or see this region's nucleotide sequence