Strain Fitness in Escherichia coli ECRC101 around MCAODC_23740

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_23730 and MCAODC_23735 overlap by 35 nucleotidesMCAODC_23735 and MCAODC_23740 are separated by 840 nucleotides MCAODC_23730: MCAODC_23730 - IS3 family transposase, at 1,462,735 to 1,463,622 _23730 MCAODC_23735: MCAODC_23735 - AMP nucleosidase, at 1,463,588 to 1,463,677 _23735 MCAODC_23740: MCAODC_23740 - DUF3987 domain-containing protein, at 1,464,518 to 1,465,903 _23740 Position (kb) 1464 1465 1466Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1463.830 kb on - strandat 1463.841 kb on - strandat 1464.185 kb on - strandat 1464.233 kb on + strandat 1464.233 kb on + strandat 1464.254 kb on - strandat 1464.298 kb on + strandat 1464.356 kb on + strandat 1464.494 kb on - strandat 1464.496 kb on - strandat 1464.650 kb on + strandat 1464.697 kb on - strand, within MCAODC_23740at 1464.798 kb on + strand, within MCAODC_23740at 1464.799 kb on - strand, within MCAODC_23740at 1464.811 kb on - strand, within MCAODC_23740at 1464.822 kb on - strand, within MCAODC_23740at 1464.909 kb on + strand, within MCAODC_23740at 1464.910 kb on - strand, within MCAODC_23740at 1464.931 kb on - strand, within MCAODC_23740at 1465.523 kb on - strand, within MCAODC_23740at 1465.655 kb on - strand, within MCAODC_23740at 1466.434 kb on + strandat 1466.435 kb on - strandat 1466.502 kb on + strandat 1466.502 kb on + strandat 1466.548 kb on - strandat 1466.564 kb on - strandat 1466.578 kb on + strandat 1466.579 kb on - strandat 1466.579 kb on - strandat 1466.624 kb on + strandat 1466.625 kb on - strandat 1466.629 kb on + strandat 1466.630 kb on - strandat 1466.634 kb on - strandat 1466.639 kb on - strandat 1466.654 kb on - strandat 1466.683 kb on + strandat 1466.765 kb on + strandat 1466.767 kb on + strandat 1466.767 kb on + strandat 1466.767 kb on + strandat 1466.767 kb on + strandat 1466.768 kb on - strandat 1466.771 kb on + strandat 1466.772 kb on - strandat 1466.799 kb on - strandat 1466.882 kb on + strandat 1466.882 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,463,830 - +1.8
1,463,841 - +1.3
1,464,185 - -4.0
1,464,233 + +0.3
1,464,233 + +0.2
1,464,254 - +0.1
1,464,298 + -0.7
1,464,356 + +0.5
1,464,494 - +1.4
1,464,496 - +0.1
1,464,650 + +0.6
1,464,697 - MCAODC_23740 0.13 -0.9
1,464,798 + MCAODC_23740 0.20 +0.5
1,464,799 - MCAODC_23740 0.20 +1.6
1,464,811 - MCAODC_23740 0.21 +0.8
1,464,822 - MCAODC_23740 0.22 +1.0
1,464,909 + MCAODC_23740 0.28 -2.8
1,464,910 - MCAODC_23740 0.28 -2.0
1,464,931 - MCAODC_23740 0.30 +1.7
1,465,523 - MCAODC_23740 0.73 +1.0
1,465,655 - MCAODC_23740 0.82 -1.6
1,466,434 + +0.3
1,466,435 - +1.6
1,466,502 + +2.3
1,466,502 + -2.9
1,466,548 - +2.7
1,466,564 - -0.1
1,466,578 + -0.3
1,466,579 - +0.1
1,466,579 - +1.1
1,466,624 + +0.9
1,466,625 - +0.3
1,466,629 + +0.8
1,466,630 - -0.0
1,466,634 - +0.1
1,466,639 - -0.3
1,466,654 - -3.1
1,466,683 + +1.5
1,466,765 + +0.0
1,466,767 + +2.1
1,466,767 + +1.2
1,466,767 + +0.3
1,466,767 + -1.0
1,466,768 - +1.5
1,466,771 + -3.1
1,466,772 - +0.5
1,466,799 - -3.0
1,466,882 + -0.8
1,466,882 + -1.6

Or see this region's nucleotide sequence