Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_23720 and tnp-IS3 are separated by 60 nucleotides tnp-IS3 and MCAODC_23730 overlap by 1 nucleotides MCAODC_23730 and MCAODC_23735 overlap by 35 nucleotides MCAODC_23735 and MCAODC_23740 are separated by 840 nucleotides
MCAODC_23720: MCAODC_23720 - Inovirus Gp2 family protein, at 1,461,821 to 1,462,348
_23720
MCAODC_23725: tnp-IS3 - IS3 family transposase, at 1,462,409 to 1,462,735
tnp-IS3
MCAODC_23730: MCAODC_23730 - IS3 family transposase, at 1,462,735 to 1,463,622
_23730
MCAODC_23735: MCAODC_23735 - AMP nucleosidase, at 1,463,588 to 1,463,677
_23735
MCAODC_23740: MCAODC_23740 - DUF3987 domain-containing protein, at 1,464,518 to 1,465,903
_23740
Position (kb)
1462
1463
1464 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1461.759 kb on + strand at 1461.759 kb on + strand at 1461.794 kb on - strand at 1461.799 kb on + strand at 1461.803 kb on - strand at 1461.807 kb on - strand at 1461.809 kb on + strand at 1461.810 kb on - strand at 1461.810 kb on - strand at 1461.810 kb on - strand at 1461.818 kb on - strand at 1461.826 kb on + strand at 1461.827 kb on - strand at 1461.827 kb on - strand at 1461.827 kb on - strand at 1461.881 kb on - strand, within MCAODC_23720 at 1461.884 kb on - strand, within MCAODC_23720 at 1461.884 kb on - strand, within MCAODC_23720 at 1461.912 kb on - strand, within MCAODC_23720 at 1461.915 kb on + strand, within MCAODC_23720 at 1461.916 kb on - strand, within MCAODC_23720 at 1461.916 kb on - strand, within MCAODC_23720 at 1461.916 kb on - strand, within MCAODC_23720 at 1461.920 kb on - strand, within MCAODC_23720 at 1461.932 kb on + strand, within MCAODC_23720 at 1461.932 kb on + strand, within MCAODC_23720 at 1461.932 kb on + strand, within MCAODC_23720 at 1461.933 kb on - strand, within MCAODC_23720 at 1461.933 kb on - strand, within MCAODC_23720 at 1461.933 kb on - strand, within MCAODC_23720 at 1461.953 kb on - strand, within MCAODC_23720 at 1461.958 kb on + strand, within MCAODC_23720 at 1461.961 kb on - strand, within MCAODC_23720 at 1462.001 kb on - strand, within MCAODC_23720 at 1462.145 kb on + strand, within MCAODC_23720 at 1462.145 kb on - strand, within MCAODC_23720 at 1462.145 kb on - strand, within MCAODC_23720 at 1462.145 kb on - strand, within MCAODC_23720 at 1462.146 kb on + strand, within MCAODC_23720 at 1462.146 kb on + strand, within MCAODC_23720 at 1462.147 kb on - strand, within MCAODC_23720 at 1462.147 kb on - strand, within MCAODC_23720 at 1462.161 kb on + strand, within MCAODC_23720 at 1462.193 kb on - strand, within MCAODC_23720 at 1462.196 kb on + strand, within MCAODC_23720 at 1462.196 kb on + strand, within MCAODC_23720 at 1462.197 kb on - strand, within MCAODC_23720 at 1462.219 kb on + strand, within MCAODC_23720 at 1462.219 kb on + strand, within MCAODC_23720 at 1462.219 kb on + strand, within MCAODC_23720 at 1462.219 kb on + strand, within MCAODC_23720 at 1462.220 kb on - strand, within MCAODC_23720 at 1462.228 kb on + strand, within MCAODC_23720 at 1462.228 kb on + strand, within MCAODC_23720 at 1462.295 kb on - strand, within MCAODC_23720 at 1463.830 kb on - strand at 1463.841 kb on - strand at 1464.185 kb on - strand at 1464.233 kb on + strand at 1464.233 kb on + strand at 1464.254 kb on - strand at 1464.298 kb on + strand at 1464.356 kb on + strand at 1464.494 kb on - strand at 1464.496 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,461,759 + -0.7 1,461,759 + +0.9 1,461,794 - +0.3 1,461,799 + -1.7 1,461,803 - +0.3 1,461,807 - +1.3 1,461,809 + -0.7 1,461,810 - -0.6 1,461,810 - -1.3 1,461,810 - -1.5 1,461,818 - -0.1 1,461,826 + -0.9 1,461,827 - -0.3 1,461,827 - +0.7 1,461,827 - +0.2 1,461,881 - MCAODC_23720 0.11 +0.1 1,461,884 - MCAODC_23720 0.12 +0.6 1,461,884 - MCAODC_23720 0.12 +0.7 1,461,912 - MCAODC_23720 0.17 +1.2 1,461,915 + MCAODC_23720 0.18 +1.7 1,461,916 - MCAODC_23720 0.18 -2.5 1,461,916 - MCAODC_23720 0.18 +0.7 1,461,916 - MCAODC_23720 0.18 -0.2 1,461,920 - MCAODC_23720 0.19 -0.8 1,461,932 + MCAODC_23720 0.21 -2.4 1,461,932 + MCAODC_23720 0.21 -0.6 1,461,932 + MCAODC_23720 0.21 -0.9 1,461,933 - MCAODC_23720 0.21 +0.8 1,461,933 - MCAODC_23720 0.21 -0.9 1,461,933 - MCAODC_23720 0.21 +1.1 1,461,953 - MCAODC_23720 0.25 -2.9 1,461,958 + MCAODC_23720 0.26 -0.7 1,461,961 - MCAODC_23720 0.27 +0.2 1,462,001 - MCAODC_23720 0.34 -2.2 1,462,145 + MCAODC_23720 0.61 +0.7 1,462,145 - MCAODC_23720 0.61 +0.7 1,462,145 - MCAODC_23720 0.61 -1.1 1,462,145 - MCAODC_23720 0.61 +0.3 1,462,146 + MCAODC_23720 0.62 +0.7 1,462,146 + MCAODC_23720 0.62 -0.2 1,462,147 - MCAODC_23720 0.62 +0.0 1,462,147 - MCAODC_23720 0.62 -0.2 1,462,161 + MCAODC_23720 0.64 +0.8 1,462,193 - MCAODC_23720 0.70 +0.3 1,462,196 + MCAODC_23720 0.71 -2.9 1,462,196 + MCAODC_23720 0.71 -0.5 1,462,197 - MCAODC_23720 0.71 +1.8 1,462,219 + MCAODC_23720 0.75 +0.4 1,462,219 + MCAODC_23720 0.75 +0.2 1,462,219 + MCAODC_23720 0.75 +0.3 1,462,219 + MCAODC_23720 0.75 -0.7 1,462,220 - MCAODC_23720 0.76 +1.2 1,462,228 + MCAODC_23720 0.77 -1.3 1,462,228 + MCAODC_23720 0.77 +0.1 1,462,295 - MCAODC_23720 0.90 -1.7 1,463,830 - +1.8 1,463,841 - +1.3 1,464,185 - -4.0 1,464,233 + +0.3 1,464,233 + +0.2 1,464,254 - +0.1 1,464,298 + -0.7 1,464,356 + +0.5 1,464,494 - +1.4 1,464,496 - +0.1
Or see this region's nucleotide sequence