Strain Fitness in Escherichia coli ECRC101 around MCAODC_23725

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_23715 and MCAODC_23720 are separated by 154 nucleotidesMCAODC_23720 and tnp-IS3 are separated by 60 nucleotidestnp-IS3 and MCAODC_23730 overlap by 1 nucleotidesMCAODC_23730 and MCAODC_23735 overlap by 35 nucleotides MCAODC_23715: MCAODC_23715 - DEAD/DEAH box helicase, at 1,459,306 to 1,461,666 _23715 MCAODC_23720: MCAODC_23720 - Inovirus Gp2 family protein, at 1,461,821 to 1,462,348 _23720 MCAODC_23725: tnp-IS3 - IS3 family transposase, at 1,462,409 to 1,462,735 tnp-IS3 MCAODC_23730: MCAODC_23730 - IS3 family transposase, at 1,462,735 to 1,463,622 _23730 MCAODC_23735: MCAODC_23735 - AMP nucleosidase, at 1,463,588 to 1,463,677 _23735 Position (kb) 1462 1463Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1461.432 kb on - strandat 1461.465 kb on + strandat 1461.465 kb on + strandat 1461.465 kb on + strandat 1461.466 kb on - strandat 1461.475 kb on + strandat 1461.536 kb on - strandat 1461.598 kb on + strandat 1461.598 kb on + strandat 1461.598 kb on + strandat 1461.599 kb on - strandat 1461.638 kb on - strandat 1461.722 kb on - strandat 1461.759 kb on + strandat 1461.759 kb on + strandat 1461.794 kb on - strandat 1461.799 kb on + strandat 1461.803 kb on - strandat 1461.807 kb on - strandat 1461.809 kb on + strandat 1461.810 kb on - strandat 1461.810 kb on - strandat 1461.810 kb on - strandat 1461.818 kb on - strandat 1461.826 kb on + strandat 1461.827 kb on - strandat 1461.827 kb on - strandat 1461.827 kb on - strandat 1461.881 kb on - strand, within MCAODC_23720at 1461.884 kb on - strand, within MCAODC_23720at 1461.884 kb on - strand, within MCAODC_23720at 1461.912 kb on - strand, within MCAODC_23720at 1461.915 kb on + strand, within MCAODC_23720at 1461.916 kb on - strand, within MCAODC_23720at 1461.916 kb on - strand, within MCAODC_23720at 1461.916 kb on - strand, within MCAODC_23720at 1461.920 kb on - strand, within MCAODC_23720at 1461.932 kb on + strand, within MCAODC_23720at 1461.932 kb on + strand, within MCAODC_23720at 1461.932 kb on + strand, within MCAODC_23720at 1461.933 kb on - strand, within MCAODC_23720at 1461.933 kb on - strand, within MCAODC_23720at 1461.933 kb on - strand, within MCAODC_23720at 1461.953 kb on - strand, within MCAODC_23720at 1461.958 kb on + strand, within MCAODC_23720at 1461.961 kb on - strand, within MCAODC_23720at 1462.001 kb on - strand, within MCAODC_23720at 1462.145 kb on + strand, within MCAODC_23720at 1462.145 kb on - strand, within MCAODC_23720at 1462.145 kb on - strand, within MCAODC_23720at 1462.145 kb on - strand, within MCAODC_23720at 1462.146 kb on + strand, within MCAODC_23720at 1462.146 kb on + strand, within MCAODC_23720at 1462.147 kb on - strand, within MCAODC_23720at 1462.147 kb on - strand, within MCAODC_23720at 1462.161 kb on + strand, within MCAODC_23720at 1462.193 kb on - strand, within MCAODC_23720at 1462.196 kb on + strand, within MCAODC_23720at 1462.196 kb on + strand, within MCAODC_23720at 1462.197 kb on - strand, within MCAODC_23720at 1462.219 kb on + strand, within MCAODC_23720at 1462.219 kb on + strand, within MCAODC_23720at 1462.219 kb on + strand, within MCAODC_23720at 1462.219 kb on + strand, within MCAODC_23720at 1462.220 kb on - strand, within MCAODC_23720at 1462.228 kb on + strand, within MCAODC_23720at 1462.228 kb on + strand, within MCAODC_23720at 1462.295 kb on - strand, within MCAODC_23720

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,461,432 - +0.4
1,461,465 + -1.0
1,461,465 + +1.5
1,461,465 + +0.2
1,461,466 - +2.9
1,461,475 + +0.3
1,461,536 - +1.6
1,461,598 + -2.7
1,461,598 + -2.6
1,461,598 + +0.1
1,461,599 - -0.2
1,461,638 - -0.4
1,461,722 - +0.5
1,461,759 + -0.7
1,461,759 + +0.9
1,461,794 - +0.3
1,461,799 + -1.7
1,461,803 - +0.3
1,461,807 - +1.3
1,461,809 + -0.7
1,461,810 - -0.6
1,461,810 - -1.3
1,461,810 - -1.5
1,461,818 - -0.1
1,461,826 + -0.9
1,461,827 - -0.3
1,461,827 - +0.7
1,461,827 - +0.2
1,461,881 - MCAODC_23720 0.11 +0.1
1,461,884 - MCAODC_23720 0.12 +0.6
1,461,884 - MCAODC_23720 0.12 +0.7
1,461,912 - MCAODC_23720 0.17 +1.2
1,461,915 + MCAODC_23720 0.18 +1.7
1,461,916 - MCAODC_23720 0.18 -2.5
1,461,916 - MCAODC_23720 0.18 +0.7
1,461,916 - MCAODC_23720 0.18 -0.2
1,461,920 - MCAODC_23720 0.19 -0.8
1,461,932 + MCAODC_23720 0.21 -2.4
1,461,932 + MCAODC_23720 0.21 -0.6
1,461,932 + MCAODC_23720 0.21 -0.9
1,461,933 - MCAODC_23720 0.21 +0.8
1,461,933 - MCAODC_23720 0.21 -0.9
1,461,933 - MCAODC_23720 0.21 +1.1
1,461,953 - MCAODC_23720 0.25 -2.9
1,461,958 + MCAODC_23720 0.26 -0.7
1,461,961 - MCAODC_23720 0.27 +0.2
1,462,001 - MCAODC_23720 0.34 -2.2
1,462,145 + MCAODC_23720 0.61 +0.7
1,462,145 - MCAODC_23720 0.61 +0.7
1,462,145 - MCAODC_23720 0.61 -1.1
1,462,145 - MCAODC_23720 0.61 +0.3
1,462,146 + MCAODC_23720 0.62 +0.7
1,462,146 + MCAODC_23720 0.62 -0.2
1,462,147 - MCAODC_23720 0.62 +0.0
1,462,147 - MCAODC_23720 0.62 -0.2
1,462,161 + MCAODC_23720 0.64 +0.8
1,462,193 - MCAODC_23720 0.70 +0.3
1,462,196 + MCAODC_23720 0.71 -2.9
1,462,196 + MCAODC_23720 0.71 -0.5
1,462,197 - MCAODC_23720 0.71 +1.8
1,462,219 + MCAODC_23720 0.75 +0.4
1,462,219 + MCAODC_23720 0.75 +0.2
1,462,219 + MCAODC_23720 0.75 +0.3
1,462,219 + MCAODC_23720 0.75 -0.7
1,462,220 - MCAODC_23720 0.76 +1.2
1,462,228 + MCAODC_23720 0.77 -1.3
1,462,228 + MCAODC_23720 0.77 +0.1
1,462,295 - MCAODC_23720 0.90 -1.7

Or see this region's nucleotide sequence