Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_23405 and MCAODC_23410 are separated by 457 nucleotides MCAODC_23410 and MCAODC_23415 are separated by 453 nucleotides MCAODC_23415 and tnp-IS1 are separated by 128 nucleotides
MCAODC_23405: MCAODC_23405 - hypothetical protein, at 1,410,417 to 1,410,926
_23405
MCAODC_23410: MCAODC_23410 - Membrane protein, at 1,411,384 to 1,411,842
_23410
MCAODC_23415: MCAODC_23415 - HTH-Tnp-IS1 domain-containing protein, at 1,412,296 to 1,412,355
_23415
MCAODC_23420: tnp-IS1 - IS1 family transposase, at 1,412,484 to 1,412,777
tnp-IS1
Position (kb) 1411
1412 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1410.403 kb on - strand at 1410.449 kb on + strand at 1410.482 kb on - strand, within MCAODC_23405 at 1410.482 kb on - strand, within MCAODC_23405 at 1410.549 kb on + strand, within MCAODC_23405 at 1410.550 kb on - strand, within MCAODC_23405 at 1410.573 kb on + strand, within MCAODC_23405 at 1410.633 kb on - strand, within MCAODC_23405 at 1410.633 kb on - strand, within MCAODC_23405 at 1410.663 kb on + strand, within MCAODC_23405 at 1410.664 kb on - strand, within MCAODC_23405 at 1410.664 kb on - strand, within MCAODC_23405 at 1410.664 kb on - strand, within MCAODC_23405 at 1410.664 kb on - strand, within MCAODC_23405 at 1410.664 kb on - strand, within MCAODC_23405 at 1410.664 kb on - strand, within MCAODC_23405 at 1410.664 kb on - strand, within MCAODC_23405 at 1410.664 kb on - strand, within MCAODC_23405 at 1410.664 kb on - strand, within MCAODC_23405 at 1410.699 kb on + strand, within MCAODC_23405 at 1410.700 kb on - strand, within MCAODC_23405 at 1410.703 kb on - strand, within MCAODC_23405 at 1410.735 kb on - strand, within MCAODC_23405 at 1410.746 kb on + strand, within MCAODC_23405 at 1410.802 kb on + strand, within MCAODC_23405 at 1410.802 kb on + strand, within MCAODC_23405 at 1411.007 kb on - strand at 1411.068 kb on + strand at 1411.102 kb on - strand at 1411.110 kb on + strand at 1411.127 kb on - strand at 1411.127 kb on - strand at 1411.139 kb on - strand at 1411.353 kb on - strand at 1411.381 kb on + strand at 1411.468 kb on + strand, within MCAODC_23410 at 1411.678 kb on - strand, within MCAODC_23410 at 1412.054 kb on + strand at 1412.202 kb on - strand at 1412.202 kb on - strand at 1412.331 kb on - strand, within MCAODC_23415 at 1412.365 kb on + strand at 1412.419 kb on - strand at 1412.455 kb on - strand at 1412.564 kb on - strand, within tnp-IS1 at 1412.590 kb on - strand, within tnp-IS1 at 1412.751 kb on + strand at 1412.761 kb on + strand at 1412.762 kb on - strand at 1412.769 kb on + strand at 1412.800 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,410,403 - -0.7 1,410,449 + -1.6 1,410,482 - MCAODC_23405 0.13 +1.4 1,410,482 - MCAODC_23405 0.13 +1.9 1,410,549 + MCAODC_23405 0.26 -2.5 1,410,550 - MCAODC_23405 0.26 -1.1 1,410,573 + MCAODC_23405 0.31 -1.2 1,410,633 - MCAODC_23405 0.42 +0.9 1,410,633 - MCAODC_23405 0.42 +1.5 1,410,663 + MCAODC_23405 0.48 -1.7 1,410,664 - MCAODC_23405 0.48 +0.2 1,410,664 - MCAODC_23405 0.48 +0.4 1,410,664 - MCAODC_23405 0.48 +0.2 1,410,664 - MCAODC_23405 0.48 -0.8 1,410,664 - MCAODC_23405 0.48 +1.3 1,410,664 - MCAODC_23405 0.48 -0.6 1,410,664 - MCAODC_23405 0.48 -1.2 1,410,664 - MCAODC_23405 0.48 +0.8 1,410,664 - MCAODC_23405 0.48 +0.3 1,410,699 + MCAODC_23405 0.55 -1.0 1,410,700 - MCAODC_23405 0.55 -2.1 1,410,703 - MCAODC_23405 0.56 +0.2 1,410,735 - MCAODC_23405 0.62 -0.9 1,410,746 + MCAODC_23405 0.65 -0.3 1,410,802 + MCAODC_23405 0.75 -3.9 1,410,802 + MCAODC_23405 0.75 +0.9 1,411,007 - +0.0 1,411,068 + -0.3 1,411,102 - +0.4 1,411,110 + -2.0 1,411,127 - -2.5 1,411,127 - +1.4 1,411,139 - -3.0 1,411,353 - -2.5 1,411,381 + -0.9 1,411,468 + MCAODC_23410 0.18 -0.1 1,411,678 - MCAODC_23410 0.64 -2.4 1,412,054 + +0.9 1,412,202 - -1.2 1,412,202 - +1.1 1,412,331 - MCAODC_23415 0.58 +1.1 1,412,365 + -2.3 1,412,419 - -2.1 1,412,455 - +0.5 1,412,564 - tnp-IS1 MCAODC_23420 0.27 +0.0 1,412,590 - tnp-IS1 MCAODC_23420 0.36 -2.5 1,412,751 + -4.7 1,412,761 + -1.3 1,412,762 - -0.7 1,412,769 + +0.0 1,412,800 - +2.9
Or see this region's nucleotide sequence