Strain Fitness in Escherichia coli ECRC101 around MCAODC_23375

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_23365 and MCAODC_23370 overlap by 4 nucleotidesMCAODC_23370 and fhaC are separated by 240 nucleotidesfhaC and tnp-IS3 are separated by 180 nucleotidestnp-IS3 and MCAODC_23385 overlap by 1 nucleotides MCAODC_23365: MCAODC_23365 - helicase, at 1,403,177 to 1,405,345 _23365 MCAODC_23370: MCAODC_23370 - Putative UvrD/REP helicase-like protein, at 1,405,342 to 1,405,857 _23370 MCAODC_23375: fhaC - ShlB/FhaC/HecB family hemolysin secretion/activation protein, at 1,406,098 to 1,407,144 fhaC MCAODC_23380: tnp-IS3 - IS3 family transposase, at 1,407,325 to 1,407,651 tnp-IS3 MCAODC_23385: MCAODC_23385 - IS3 family transposase, at 1,407,651 to 1,408,538 _23385 Position (kb) 1406 1407 1408Strain fitness (log2 ratio) -2 -1 0 1at 1405.157 kb on - strandat 1405.627 kb on + strand, within MCAODC_23370at 1405.973 kb on + strandat 1405.974 kb on - strandat 1405.975 kb on + strandat 1406.465 kb on - strand, within fhaCat 1406.465 kb on - strand, within fhaCat 1406.465 kb on - strand, within fhaCat 1406.574 kb on + strand, within fhaCat 1406.574 kb on + strand, within fhaCat 1406.575 kb on - strand, within fhaCat 1406.575 kb on - strand, within fhaCat 1406.575 kb on - strand, within fhaCat 1406.602 kb on + strand, within fhaCat 1406.669 kb on + strand, within fhaCat 1406.669 kb on + strand, within fhaCat 1406.670 kb on - strand, within fhaCat 1406.670 kb on - strand, within fhaCat 1406.670 kb on - strand, within fhaCat 1406.680 kb on - strand, within fhaCat 1406.730 kb on + strand, within fhaCat 1406.795 kb on + strand, within fhaCat 1406.795 kb on + strand, within fhaCat 1406.795 kb on + strand, within fhaCat 1406.795 kb on + strand, within fhaCat 1406.795 kb on + strand, within fhaCat 1406.796 kb on - strand, within fhaCat 1406.796 kb on - strand, within fhaCat 1406.796 kb on - strand, within fhaCat 1406.826 kb on + strand, within fhaCat 1406.827 kb on - strand, within fhaCat 1406.841 kb on + strand, within fhaCat 1406.842 kb on - strand, within fhaCat 1406.842 kb on - strand, within fhaCat 1406.944 kb on - strand, within fhaCat 1407.121 kb on + strandat 1407.121 kb on + strandat 1407.133 kb on + strandat 1407.245 kb on + strandat 1407.256 kb on + strandat 1407.257 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,405,157 - -0.6
1,405,627 + MCAODC_23370 0.55 -0.9
1,405,973 + +0.1
1,405,974 - -1.9
1,405,975 + +1.2
1,406,465 - fhaC MCAODC_23375 0.35 +0.2
1,406,465 - fhaC MCAODC_23375 0.35 +1.5
1,406,465 - fhaC MCAODC_23375 0.35 +0.8
1,406,574 + fhaC MCAODC_23375 0.45 +0.4
1,406,574 + fhaC MCAODC_23375 0.45 -0.2
1,406,575 - fhaC MCAODC_23375 0.46 +0.0
1,406,575 - fhaC MCAODC_23375 0.46 +0.3
1,406,575 - fhaC MCAODC_23375 0.46 +0.7
1,406,602 + fhaC MCAODC_23375 0.48 -2.4
1,406,669 + fhaC MCAODC_23375 0.55 +0.3
1,406,669 + fhaC MCAODC_23375 0.55 -0.9
1,406,670 - fhaC MCAODC_23375 0.55 +1.4
1,406,670 - fhaC MCAODC_23375 0.55 -2.5
1,406,670 - fhaC MCAODC_23375 0.55 +1.1
1,406,680 - fhaC MCAODC_23375 0.56 +0.6
1,406,730 + fhaC MCAODC_23375 0.60 -0.8
1,406,795 + fhaC MCAODC_23375 0.67 -1.1
1,406,795 + fhaC MCAODC_23375 0.67 -0.5
1,406,795 + fhaC MCAODC_23375 0.67 +0.1
1,406,795 + fhaC MCAODC_23375 0.67 +0.1
1,406,795 + fhaC MCAODC_23375 0.67 +0.1
1,406,796 - fhaC MCAODC_23375 0.67 -1.2
1,406,796 - fhaC MCAODC_23375 0.67 -0.2
1,406,796 - fhaC MCAODC_23375 0.67 +0.8
1,406,826 + fhaC MCAODC_23375 0.70 -0.3
1,406,827 - fhaC MCAODC_23375 0.70 +0.6
1,406,841 + fhaC MCAODC_23375 0.71 -0.4
1,406,842 - fhaC MCAODC_23375 0.71 -0.5
1,406,842 - fhaC MCAODC_23375 0.71 +0.3
1,406,944 - fhaC MCAODC_23375 0.81 +1.4
1,407,121 + -2.6
1,407,121 + -2.4
1,407,133 + +0.9
1,407,245 + -1.3
1,407,256 + +0.6
1,407,257 - -1.5

Or see this region's nucleotide sequence