Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_23365 and MCAODC_23370 overlap by 4 nucleotides MCAODC_23370 and fhaC are separated by 240 nucleotides fhaC and tnp-IS3 are separated by 180 nucleotides tnp-IS3 and MCAODC_23385 overlap by 1 nucleotides
MCAODC_23365: MCAODC_23365 - helicase, at 1,403,177 to 1,405,345
_23365
MCAODC_23370: MCAODC_23370 - Putative UvrD/REP helicase-like protein, at 1,405,342 to 1,405,857
_23370
MCAODC_23375: fhaC - ShlB/FhaC/HecB family hemolysin secretion/activation protein, at 1,406,098 to 1,407,144
fhaC
MCAODC_23380: tnp-IS3 - IS3 family transposase, at 1,407,325 to 1,407,651
tnp-IS3
MCAODC_23385: MCAODC_23385 - IS3 family transposase, at 1,407,651 to 1,408,538
_23385
Position (kb)
1406
1407
1408 Strain fitness (log2 ratio)
-2
-1
0
1 at 1405.157 kb on - strand at 1405.627 kb on + strand, within MCAODC_23370 at 1405.973 kb on + strand at 1405.974 kb on - strand at 1405.975 kb on + strand at 1406.465 kb on - strand, within fhaC at 1406.465 kb on - strand, within fhaC at 1406.465 kb on - strand, within fhaC at 1406.574 kb on + strand, within fhaC at 1406.574 kb on + strand, within fhaC at 1406.575 kb on - strand, within fhaC at 1406.575 kb on - strand, within fhaC at 1406.575 kb on - strand, within fhaC at 1406.602 kb on + strand, within fhaC at 1406.669 kb on + strand, within fhaC at 1406.669 kb on + strand, within fhaC at 1406.670 kb on - strand, within fhaC at 1406.670 kb on - strand, within fhaC at 1406.670 kb on - strand, within fhaC at 1406.680 kb on - strand, within fhaC at 1406.730 kb on + strand, within fhaC at 1406.795 kb on + strand, within fhaC at 1406.795 kb on + strand, within fhaC at 1406.795 kb on + strand, within fhaC at 1406.795 kb on + strand, within fhaC at 1406.795 kb on + strand, within fhaC at 1406.796 kb on - strand, within fhaC at 1406.796 kb on - strand, within fhaC at 1406.796 kb on - strand, within fhaC at 1406.826 kb on + strand, within fhaC at 1406.827 kb on - strand, within fhaC at 1406.841 kb on + strand, within fhaC at 1406.842 kb on - strand, within fhaC at 1406.842 kb on - strand, within fhaC at 1406.944 kb on - strand, within fhaC at 1407.121 kb on + strand at 1407.121 kb on + strand at 1407.133 kb on + strand at 1407.245 kb on + strand at 1407.256 kb on + strand at 1407.257 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,405,157 - -0.6 1,405,627 + MCAODC_23370 0.55 -0.9 1,405,973 + +0.1 1,405,974 - -1.9 1,405,975 + +1.2 1,406,465 - fhaC MCAODC_23375 0.35 +0.2 1,406,465 - fhaC MCAODC_23375 0.35 +1.5 1,406,465 - fhaC MCAODC_23375 0.35 +0.8 1,406,574 + fhaC MCAODC_23375 0.45 +0.4 1,406,574 + fhaC MCAODC_23375 0.45 -0.2 1,406,575 - fhaC MCAODC_23375 0.46 +0.0 1,406,575 - fhaC MCAODC_23375 0.46 +0.3 1,406,575 - fhaC MCAODC_23375 0.46 +0.7 1,406,602 + fhaC MCAODC_23375 0.48 -2.4 1,406,669 + fhaC MCAODC_23375 0.55 +0.3 1,406,669 + fhaC MCAODC_23375 0.55 -0.9 1,406,670 - fhaC MCAODC_23375 0.55 +1.4 1,406,670 - fhaC MCAODC_23375 0.55 -2.5 1,406,670 - fhaC MCAODC_23375 0.55 +1.1 1,406,680 - fhaC MCAODC_23375 0.56 +0.6 1,406,730 + fhaC MCAODC_23375 0.60 -0.8 1,406,795 + fhaC MCAODC_23375 0.67 -1.1 1,406,795 + fhaC MCAODC_23375 0.67 -0.5 1,406,795 + fhaC MCAODC_23375 0.67 +0.1 1,406,795 + fhaC MCAODC_23375 0.67 +0.1 1,406,795 + fhaC MCAODC_23375 0.67 +0.1 1,406,796 - fhaC MCAODC_23375 0.67 -1.2 1,406,796 - fhaC MCAODC_23375 0.67 -0.2 1,406,796 - fhaC MCAODC_23375 0.67 +0.8 1,406,826 + fhaC MCAODC_23375 0.70 -0.3 1,406,827 - fhaC MCAODC_23375 0.70 +0.6 1,406,841 + fhaC MCAODC_23375 0.71 -0.4 1,406,842 - fhaC MCAODC_23375 0.71 -0.5 1,406,842 - fhaC MCAODC_23375 0.71 +0.3 1,406,944 - fhaC MCAODC_23375 0.81 +1.4 1,407,121 + -2.6 1,407,121 + -2.4 1,407,133 + +0.9 1,407,245 + -1.3 1,407,256 + +0.6 1,407,257 - -1.5
Or see this region's nucleotide sequence