Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_23250 and MCAODC_23255 are separated by 293 nucleotides MCAODC_23255 and MCAODC_23260 overlap by 4 nucleotides MCAODC_23260 and MCAODC_23265 are separated by 46 nucleotides MCAODC_23265 and MCAODC_23270 are separated by 49 nucleotides MCAODC_23270 and MCAODC_23275 overlap by 1 nucleotides
MCAODC_23250: MCAODC_23250 - restriction endonuclease subunit M, at 1,383,924 to 1,384,766
_23250
MCAODC_23255: MCAODC_23255 - DUF5983 domain-containing protein, at 1,385,060 to 1,385,551
_23255
MCAODC_23260: MCAODC_23260 - toxin, at 1,385,548 to 1,385,922
_23260
MCAODC_23265: MCAODC_23265 - antitoxin, at 1,385,969 to 1,386,343
_23265
MCAODC_23270: MCAODC_23270 - Phage-related protein, at 1,386,393 to 1,386,506
_23270
MCAODC_23275: MCAODC_23275 - DUF987 domain-containing protein, at 1,386,506 to 1,386,727
_23275
Position (kb) 1385
1386 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1384.064 kb on + strand, within MCAODC_23250 at 1384.196 kb on + strand, within MCAODC_23250 at 1384.197 kb on - strand, within MCAODC_23250 at 1384.197 kb on - strand, within MCAODC_23250 at 1384.424 kb on + strand, within MCAODC_23250 at 1384.424 kb on + strand, within MCAODC_23250 at 1384.425 kb on - strand, within MCAODC_23250 at 1384.425 kb on - strand, within MCAODC_23250 at 1384.425 kb on - strand, within MCAODC_23250 at 1384.643 kb on + strand, within MCAODC_23250 at 1384.644 kb on - strand, within MCAODC_23250 at 1384.667 kb on + strand, within MCAODC_23250 at 1384.713 kb on - strand at 1384.721 kb on + strand at 1385.078 kb on + strand at 1385.465 kb on - strand, within MCAODC_23255 at 1385.649 kb on + strand, within MCAODC_23260 at 1385.649 kb on + strand, within MCAODC_23260 at 1385.734 kb on - strand, within MCAODC_23260 at 1385.767 kb on - strand, within MCAODC_23260 at 1385.888 kb on - strand at 1385.896 kb on + strand at 1385.897 kb on - strand at 1385.925 kb on + strand at 1385.926 kb on - strand at 1385.936 kb on + strand at 1385.943 kb on + strand at 1386.079 kb on + strand, within MCAODC_23265 at 1386.080 kb on - strand, within MCAODC_23265 at 1386.165 kb on + strand, within MCAODC_23265 at 1386.165 kb on + strand, within MCAODC_23265 at 1386.165 kb on + strand, within MCAODC_23265 at 1386.165 kb on + strand, within MCAODC_23265 at 1386.165 kb on + strand, within MCAODC_23265 at 1386.165 kb on + strand, within MCAODC_23265 at 1386.166 kb on - strand, within MCAODC_23265 at 1386.166 kb on - strand, within MCAODC_23265 at 1386.166 kb on - strand, within MCAODC_23265 at 1386.166 kb on - strand, within MCAODC_23265 at 1386.216 kb on + strand, within MCAODC_23265 at 1386.381 kb on - strand at 1386.427 kb on + strand, within MCAODC_23270 at 1386.427 kb on + strand, within MCAODC_23270 at 1386.427 kb on + strand, within MCAODC_23270 at 1386.428 kb on - strand, within MCAODC_23270 at 1386.428 kb on - strand, within MCAODC_23270 at 1386.428 kb on - strand, within MCAODC_23270 at 1386.428 kb on - strand, within MCAODC_23270 at 1386.537 kb on + strand, within MCAODC_23275 at 1386.537 kb on + strand, within MCAODC_23275 at 1386.538 kb on - strand, within MCAODC_23275 at 1386.538 kb on - strand, within MCAODC_23275
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,384,064 + MCAODC_23250 0.17 -1.0 1,384,196 + MCAODC_23250 0.32 -2.6 1,384,197 - MCAODC_23250 0.32 +2.0 1,384,197 - MCAODC_23250 0.32 +1.5 1,384,424 + MCAODC_23250 0.59 +1.3 1,384,424 + MCAODC_23250 0.59 +0.7 1,384,425 - MCAODC_23250 0.59 +2.5 1,384,425 - MCAODC_23250 0.59 -2.5 1,384,425 - MCAODC_23250 0.59 +1.1 1,384,643 + MCAODC_23250 0.85 -0.9 1,384,644 - MCAODC_23250 0.85 -1.8 1,384,667 + MCAODC_23250 0.88 +0.1 1,384,713 - -1.5 1,384,721 + +0.7 1,385,078 + +1.4 1,385,465 - MCAODC_23255 0.82 +0.3 1,385,649 + MCAODC_23260 0.27 -0.8 1,385,649 + MCAODC_23260 0.27 +0.4 1,385,734 - MCAODC_23260 0.50 +0.4 1,385,767 - MCAODC_23260 0.58 +0.4 1,385,888 - +0.6 1,385,896 + -4.3 1,385,897 - +1.0 1,385,925 + -2.3 1,385,926 - +0.3 1,385,936 + +1.1 1,385,943 + -1.2 1,386,079 + MCAODC_23265 0.29 -2.9 1,386,080 - MCAODC_23265 0.30 +1.3 1,386,165 + MCAODC_23265 0.52 +1.3 1,386,165 + MCAODC_23265 0.52 +2.1 1,386,165 + MCAODC_23265 0.52 -0.5 1,386,165 + MCAODC_23265 0.52 -1.0 1,386,165 + MCAODC_23265 0.52 -0.8 1,386,165 + MCAODC_23265 0.52 -1.0 1,386,166 - MCAODC_23265 0.53 +0.1 1,386,166 - MCAODC_23265 0.53 +0.2 1,386,166 - MCAODC_23265 0.53 -0.1 1,386,166 - MCAODC_23265 0.53 -0.4 1,386,216 + MCAODC_23265 0.66 +0.7 1,386,381 - -1.3 1,386,427 + MCAODC_23270 0.30 +0.4 1,386,427 + MCAODC_23270 0.30 +0.1 1,386,427 + MCAODC_23270 0.30 -2.9 1,386,428 - MCAODC_23270 0.31 -1.6 1,386,428 - MCAODC_23270 0.31 -0.9 1,386,428 - MCAODC_23270 0.31 -2.8 1,386,428 - MCAODC_23270 0.31 -0.6 1,386,537 + MCAODC_23275 0.14 +1.1 1,386,537 + MCAODC_23275 0.14 +0.1 1,386,538 - MCAODC_23275 0.14 +1.1 1,386,538 - MCAODC_23275 0.14 -0.5
Or see this region's nucleotide sequence