Strain Fitness in Escherichia coli ECRC101 around MCAODC_23065

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyceM and yceH are separated by 1 nucleotidesyceH and rimJ are separated by 10 nucleotidesrimJ and mdtH are separated by 235 nucleotides MCAODC_23060: yceM - Putative oxidoreductase YceM, at 1,353,606 to 1,354,529 yceM MCAODC_23065: yceH - UPF0502 protein YceH, at 1,354,531 to 1,355,178 yceH MCAODC_23070: rimJ - ribosomal protein S5-alanine N-acetyltransferase, at 1,355,189 to 1,355,773 rimJ MCAODC_23075: mdtH - multidrug efflux MFS transporter MdtH, at 1,356,009 to 1,357,217 mdtH Position (kb) 1354 1355 1356Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1353.559 kb on - strandat 1353.564 kb on - strandat 1353.645 kb on - strandat 1353.784 kb on - strand, within yceMat 1353.784 kb on - strand, within yceMat 1353.893 kb on + strand, within yceMat 1353.894 kb on - strand, within yceMat 1353.894 kb on - strand, within yceMat 1353.894 kb on - strand, within yceMat 1353.894 kb on - strand, within yceMat 1353.894 kb on - strand, within yceMat 1354.036 kb on + strand, within yceMat 1354.037 kb on - strand, within yceMat 1354.037 kb on - strand, within yceMat 1354.086 kb on - strand, within yceMat 1354.086 kb on - strand, within yceMat 1354.266 kb on + strand, within yceMat 1354.267 kb on - strand, within yceMat 1354.267 kb on - strand, within yceMat 1354.281 kb on + strand, within yceMat 1354.282 kb on - strand, within yceMat 1354.287 kb on - strand, within yceMat 1354.287 kb on - strand, within yceMat 1354.437 kb on + strandat 1354.498 kb on - strandat 1354.667 kb on - strand, within yceHat 1354.692 kb on - strand, within yceHat 1354.938 kb on - strand, within yceHat 1354.938 kb on - strand, within yceHat 1354.980 kb on - strand, within yceHat 1354.980 kb on - strand, within yceHat 1354.980 kb on - strand, within yceHat 1354.999 kb on - strand, within yceHat 1355.077 kb on + strand, within yceHat 1355.078 kb on - strand, within yceHat 1355.172 kb on - strandat 1355.220 kb on - strandat 1355.265 kb on + strand, within rimJat 1355.265 kb on + strand, within rimJat 1355.266 kb on - strand, within rimJat 1355.326 kb on + strand, within rimJat 1355.340 kb on + strand, within rimJat 1355.341 kb on - strand, within rimJat 1355.341 kb on - strand, within rimJat 1355.341 kb on - strand, within rimJat 1355.341 kb on - strand, within rimJat 1355.345 kb on - strand, within rimJat 1355.351 kb on - strand, within rimJat 1355.380 kb on + strand, within rimJat 1355.381 kb on - strand, within rimJat 1355.545 kb on - strand, within rimJat 1355.545 kb on - strand, within rimJat 1355.671 kb on - strand, within rimJat 1355.756 kb on - strandat 1355.777 kb on - strandat 1355.777 kb on - strandat 1355.777 kb on - strandat 1355.777 kb on - strandat 1355.777 kb on - strandat 1355.803 kb on + strandat 1355.804 kb on - strandat 1355.813 kb on + strandat 1355.813 kb on + strandat 1355.814 kb on - strandat 1355.814 kb on - strandat 1355.814 kb on - strandat 1355.817 kb on + strandat 1355.820 kb on + strandat 1355.820 kb on + strandat 1355.823 kb on + strandat 1355.824 kb on - strandat 1355.824 kb on - strandat 1355.825 kb on + strandat 1355.883 kb on + strandat 1355.884 kb on - strandat 1355.973 kb on + strandat 1355.973 kb on + strandat 1356.046 kb on - strandat 1356.065 kb on + strandat 1356.065 kb on + strandat 1356.065 kb on + strandat 1356.065 kb on + strandat 1356.066 kb on - strandat 1356.066 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,353,559 - -0.1
1,353,564 - -1.2
1,353,645 - -3.2
1,353,784 - yceM MCAODC_23060 0.19 -0.5
1,353,784 - yceM MCAODC_23060 0.19 +0.3
1,353,893 + yceM MCAODC_23060 0.31 +1.1
1,353,894 - yceM MCAODC_23060 0.31 -0.9
1,353,894 - yceM MCAODC_23060 0.31 -0.1
1,353,894 - yceM MCAODC_23060 0.31 +0.8
1,353,894 - yceM MCAODC_23060 0.31 -0.2
1,353,894 - yceM MCAODC_23060 0.31 +0.0
1,354,036 + yceM MCAODC_23060 0.47 -0.0
1,354,037 - yceM MCAODC_23060 0.47 +0.6
1,354,037 - yceM MCAODC_23060 0.47 -0.3
1,354,086 - yceM MCAODC_23060 0.52 -2.5
1,354,086 - yceM MCAODC_23060 0.52 -0.2
1,354,266 + yceM MCAODC_23060 0.71 -0.9
1,354,267 - yceM MCAODC_23060 0.72 +0.4
1,354,267 - yceM MCAODC_23060 0.72 +1.7
1,354,281 + yceM MCAODC_23060 0.73 -2.0
1,354,282 - yceM MCAODC_23060 0.73 +1.3
1,354,287 - yceM MCAODC_23060 0.74 -0.4
1,354,287 - yceM MCAODC_23060 0.74 -1.2
1,354,437 + -0.7
1,354,498 - -0.4
1,354,667 - yceH MCAODC_23065 0.21 +0.4
1,354,692 - yceH MCAODC_23065 0.25 -1.6
1,354,938 - yceH MCAODC_23065 0.63 -0.9
1,354,938 - yceH MCAODC_23065 0.63 -0.2
1,354,980 - yceH MCAODC_23065 0.69 -0.0
1,354,980 - yceH MCAODC_23065 0.69 +0.4
1,354,980 - yceH MCAODC_23065 0.69 +0.4
1,354,999 - yceH MCAODC_23065 0.72 -0.5
1,355,077 + yceH MCAODC_23065 0.84 +0.0
1,355,078 - yceH MCAODC_23065 0.84 +0.8
1,355,172 - -2.2
1,355,220 - -1.3
1,355,265 + rimJ MCAODC_23070 0.13 +0.5
1,355,265 + rimJ MCAODC_23070 0.13 +0.5
1,355,266 - rimJ MCAODC_23070 0.13 -0.2
1,355,326 + rimJ MCAODC_23070 0.23 +1.1
1,355,340 + rimJ MCAODC_23070 0.26 +1.3
1,355,341 - rimJ MCAODC_23070 0.26 +0.5
1,355,341 - rimJ MCAODC_23070 0.26 -0.2
1,355,341 - rimJ MCAODC_23070 0.26 +1.3
1,355,341 - rimJ MCAODC_23070 0.26 +0.5
1,355,345 - rimJ MCAODC_23070 0.27 -0.3
1,355,351 - rimJ MCAODC_23070 0.28 -0.0
1,355,380 + rimJ MCAODC_23070 0.33 +1.5
1,355,381 - rimJ MCAODC_23070 0.33 -0.0
1,355,545 - rimJ MCAODC_23070 0.61 +0.7
1,355,545 - rimJ MCAODC_23070 0.61 +0.7
1,355,671 - rimJ MCAODC_23070 0.82 -1.7
1,355,756 - +0.2
1,355,777 - -0.8
1,355,777 - +1.3
1,355,777 - +2.1
1,355,777 - +0.1
1,355,777 - +0.3
1,355,803 + +1.3
1,355,804 - +0.9
1,355,813 + -0.5
1,355,813 + -0.7
1,355,814 - -1.6
1,355,814 - +1.9
1,355,814 - +1.4
1,355,817 + +1.3
1,355,820 + -1.5
1,355,820 + -1.3
1,355,823 + +0.9
1,355,824 - -0.0
1,355,824 - -0.2
1,355,825 + -0.2
1,355,883 + -2.1
1,355,884 - +0.1
1,355,973 + -2.8
1,355,973 + +1.5
1,356,046 - -0.2
1,356,065 + -0.8
1,356,065 + -1.2
1,356,065 + +0.1
1,356,065 + -0.8
1,356,066 - -1.1
1,356,066 - -0.9

Or see this region's nucleotide sequence