Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_22650 and MCAODC_22655 are separated by 4 nucleotides MCAODC_22655 and MCAODC_22660 are separated by 75 nucleotides MCAODC_22660 and MCAODC_22665 are separated by 37 nucleotides MCAODC_22665 and MCAODC_22670 are separated by 147 nucleotides MCAODC_22670 and MCAODC_22675 overlap by 20 nucleotides MCAODC_22675 and MCAODC_22680 are separated by 12 nucleotides
MCAODC_22650: MCAODC_22650 - DUF1327 domain-containing protein, at 1,284,836 to 1,285,180
_22650
MCAODC_22655: MCAODC_22655 - lysis protein, at 1,285,185 to 1,285,400
_22655
MCAODC_22660: MCAODC_22660 - DUF826 domain-containing protein, at 1,285,476 to 1,285,745
_22660
MCAODC_22665: MCAODC_22665 - DUF1378 domain-containing protein, at 1,285,783 to 1,285,965
_22665
MCAODC_22670: MCAODC_22670 - YjhS, at 1,286,113 to 1,287,405
_22670
MCAODC_22675: MCAODC_22675 - RusA family crossover junction endodeoxyribonuclease, at 1,287,386 to 1,287,643
_22675
MCAODC_22680: MCAODC_22680 - DUF968 domain-containing protein, at 1,287,656 to 1,288,705
_22680
Position (kb)
1286
1287
1288 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1285.400 kb on + strand at 1285.477 kb on + strand at 1285.477 kb on + strand at 1285.477 kb on + strand at 1285.478 kb on - strand at 1285.478 kb on - strand at 1285.478 kb on - strand at 1285.478 kb on - strand at 1285.478 kb on - strand at 1285.478 kb on - strand at 1285.734 kb on + strand at 1285.871 kb on - strand, within MCAODC_22665 at 1285.872 kb on + strand, within MCAODC_22665 at 1285.874 kb on + strand, within MCAODC_22665 at 1285.890 kb on + strand, within MCAODC_22665 at 1285.891 kb on - strand, within MCAODC_22665 at 1285.913 kb on - strand, within MCAODC_22665 at 1285.913 kb on - strand, within MCAODC_22665 at 1285.937 kb on + strand, within MCAODC_22665 at 1285.985 kb on + strand at 1286.005 kb on + strand at 1286.006 kb on - strand at 1286.047 kb on + strand at 1286.048 kb on - strand at 1286.048 kb on - strand at 1286.049 kb on + strand at 1286.049 kb on + strand at 1286.049 kb on + strand at 1286.115 kb on - strand at 1286.137 kb on + strand at 1286.138 kb on - strand at 1286.140 kb on - strand at 1286.254 kb on - strand, within MCAODC_22670 at 1286.281 kb on - strand, within MCAODC_22670 at 1286.314 kb on - strand, within MCAODC_22670 at 1286.382 kb on - strand, within MCAODC_22670 at 1286.436 kb on + strand, within MCAODC_22670 at 1286.514 kb on + strand, within MCAODC_22670 at 1286.515 kb on - strand, within MCAODC_22670 at 1286.650 kb on - strand, within MCAODC_22670 at 1286.747 kb on + strand, within MCAODC_22670 at 1286.908 kb on - strand, within MCAODC_22670 at 1287.222 kb on + strand, within MCAODC_22670 at 1287.243 kb on - strand, within MCAODC_22670 at 1287.253 kb on + strand, within MCAODC_22670 at 1287.253 kb on + strand, within MCAODC_22670 at 1287.261 kb on + strand, within MCAODC_22670 at 1287.262 kb on - strand, within MCAODC_22670 at 1287.262 kb on - strand, within MCAODC_22670 at 1287.388 kb on - strand at 1287.389 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,285,400 + +0.9 1,285,477 + +1.1 1,285,477 + -0.3 1,285,477 + -0.1 1,285,478 - +0.2 1,285,478 - -0.2 1,285,478 - +0.8 1,285,478 - -1.0 1,285,478 - -1.6 1,285,478 - +0.6 1,285,734 + +1.4 1,285,871 - MCAODC_22665 0.48 +0.9 1,285,872 + MCAODC_22665 0.49 -3.8 1,285,874 + MCAODC_22665 0.50 -2.5 1,285,890 + MCAODC_22665 0.58 -1.5 1,285,891 - MCAODC_22665 0.59 -1.5 1,285,913 - MCAODC_22665 0.71 -2.4 1,285,913 - MCAODC_22665 0.71 -0.2 1,285,937 + MCAODC_22665 0.84 +0.4 1,285,985 + +0.6 1,286,005 + -3.1 1,286,006 - +0.2 1,286,047 + +0.6 1,286,048 - -0.5 1,286,048 - -1.6 1,286,049 + -1.4 1,286,049 + +0.8 1,286,049 + +0.4 1,286,115 - -0.9 1,286,137 + -1.3 1,286,138 - +0.5 1,286,140 - +0.3 1,286,254 - MCAODC_22670 0.11 -2.4 1,286,281 - MCAODC_22670 0.13 +0.0 1,286,314 - MCAODC_22670 0.16 -0.9 1,286,382 - MCAODC_22670 0.21 +1.3 1,286,436 + MCAODC_22670 0.25 -2.0 1,286,514 + MCAODC_22670 0.31 +0.4 1,286,515 - MCAODC_22670 0.31 +0.9 1,286,650 - MCAODC_22670 0.42 -1.1 1,286,747 + MCAODC_22670 0.49 -3.0 1,286,908 - MCAODC_22670 0.61 +0.8 1,287,222 + MCAODC_22670 0.86 +0.3 1,287,243 - MCAODC_22670 0.87 +0.9 1,287,253 + MCAODC_22670 0.88 +1.8 1,287,253 + MCAODC_22670 0.88 -2.1 1,287,261 + MCAODC_22670 0.89 +0.3 1,287,262 - MCAODC_22670 0.89 -0.5 1,287,262 - MCAODC_22670 0.89 +1.1 1,287,388 - +0.9 1,287,389 + +0.4
Or see this region's nucleotide sequence