Strain Fitness in Escherichia coli ECRC101 around MCAODC_22670

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_22650 and MCAODC_22655 are separated by 4 nucleotidesMCAODC_22655 and MCAODC_22660 are separated by 75 nucleotidesMCAODC_22660 and MCAODC_22665 are separated by 37 nucleotidesMCAODC_22665 and MCAODC_22670 are separated by 147 nucleotidesMCAODC_22670 and MCAODC_22675 overlap by 20 nucleotidesMCAODC_22675 and MCAODC_22680 are separated by 12 nucleotides MCAODC_22650: MCAODC_22650 - DUF1327 domain-containing protein, at 1,284,836 to 1,285,180 _22650 MCAODC_22655: MCAODC_22655 - lysis protein, at 1,285,185 to 1,285,400 _22655 MCAODC_22660: MCAODC_22660 - DUF826 domain-containing protein, at 1,285,476 to 1,285,745 _22660 MCAODC_22665: MCAODC_22665 - DUF1378 domain-containing protein, at 1,285,783 to 1,285,965 _22665 MCAODC_22670: MCAODC_22670 - YjhS, at 1,286,113 to 1,287,405 _22670 MCAODC_22675: MCAODC_22675 - RusA family crossover junction endodeoxyribonuclease, at 1,287,386 to 1,287,643 _22675 MCAODC_22680: MCAODC_22680 - DUF968 domain-containing protein, at 1,287,656 to 1,288,705 _22680 Position (kb) 1286 1287 1288Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1285.400 kb on + strandat 1285.477 kb on + strandat 1285.477 kb on + strandat 1285.477 kb on + strandat 1285.478 kb on - strandat 1285.478 kb on - strandat 1285.478 kb on - strandat 1285.478 kb on - strandat 1285.478 kb on - strandat 1285.478 kb on - strandat 1285.734 kb on + strandat 1285.871 kb on - strand, within MCAODC_22665at 1285.872 kb on + strand, within MCAODC_22665at 1285.874 kb on + strand, within MCAODC_22665at 1285.890 kb on + strand, within MCAODC_22665at 1285.891 kb on - strand, within MCAODC_22665at 1285.913 kb on - strand, within MCAODC_22665at 1285.913 kb on - strand, within MCAODC_22665at 1285.937 kb on + strand, within MCAODC_22665at 1285.985 kb on + strandat 1286.005 kb on + strandat 1286.006 kb on - strandat 1286.047 kb on + strandat 1286.048 kb on - strandat 1286.048 kb on - strandat 1286.049 kb on + strandat 1286.049 kb on + strandat 1286.049 kb on + strandat 1286.115 kb on - strandat 1286.137 kb on + strandat 1286.138 kb on - strandat 1286.140 kb on - strandat 1286.254 kb on - strand, within MCAODC_22670at 1286.281 kb on - strand, within MCAODC_22670at 1286.314 kb on - strand, within MCAODC_22670at 1286.382 kb on - strand, within MCAODC_22670at 1286.436 kb on + strand, within MCAODC_22670at 1286.514 kb on + strand, within MCAODC_22670at 1286.515 kb on - strand, within MCAODC_22670at 1286.650 kb on - strand, within MCAODC_22670at 1286.747 kb on + strand, within MCAODC_22670at 1286.908 kb on - strand, within MCAODC_22670at 1287.222 kb on + strand, within MCAODC_22670at 1287.243 kb on - strand, within MCAODC_22670at 1287.253 kb on + strand, within MCAODC_22670at 1287.253 kb on + strand, within MCAODC_22670at 1287.261 kb on + strand, within MCAODC_22670at 1287.262 kb on - strand, within MCAODC_22670at 1287.262 kb on - strand, within MCAODC_22670at 1287.388 kb on - strandat 1287.389 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,285,400 + +0.9
1,285,477 + +1.1
1,285,477 + -0.3
1,285,477 + -0.1
1,285,478 - +0.2
1,285,478 - -0.2
1,285,478 - +0.8
1,285,478 - -1.0
1,285,478 - -1.6
1,285,478 - +0.6
1,285,734 + +1.4
1,285,871 - MCAODC_22665 0.48 +0.9
1,285,872 + MCAODC_22665 0.49 -3.8
1,285,874 + MCAODC_22665 0.50 -2.5
1,285,890 + MCAODC_22665 0.58 -1.5
1,285,891 - MCAODC_22665 0.59 -1.5
1,285,913 - MCAODC_22665 0.71 -2.4
1,285,913 - MCAODC_22665 0.71 -0.2
1,285,937 + MCAODC_22665 0.84 +0.4
1,285,985 + +0.6
1,286,005 + -3.1
1,286,006 - +0.2
1,286,047 + +0.6
1,286,048 - -0.5
1,286,048 - -1.6
1,286,049 + -1.4
1,286,049 + +0.8
1,286,049 + +0.4
1,286,115 - -0.9
1,286,137 + -1.3
1,286,138 - +0.5
1,286,140 - +0.3
1,286,254 - MCAODC_22670 0.11 -2.4
1,286,281 - MCAODC_22670 0.13 +0.0
1,286,314 - MCAODC_22670 0.16 -0.9
1,286,382 - MCAODC_22670 0.21 +1.3
1,286,436 + MCAODC_22670 0.25 -2.0
1,286,514 + MCAODC_22670 0.31 +0.4
1,286,515 - MCAODC_22670 0.31 +0.9
1,286,650 - MCAODC_22670 0.42 -1.1
1,286,747 + MCAODC_22670 0.49 -3.0
1,286,908 - MCAODC_22670 0.61 +0.8
1,287,222 + MCAODC_22670 0.86 +0.3
1,287,243 - MCAODC_22670 0.87 +0.9
1,287,253 + MCAODC_22670 0.88 +1.8
1,287,253 + MCAODC_22670 0.88 -2.1
1,287,261 + MCAODC_22670 0.89 +0.3
1,287,262 - MCAODC_22670 0.89 -0.5
1,287,262 - MCAODC_22670 0.89 +1.1
1,287,388 - +0.9
1,287,389 + +0.4

Or see this region's nucleotide sequence