Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_22640 and MCAODC_22645 are separated by 270 nucleotides MCAODC_22645 and MCAODC_22650 are separated by 50 nucleotides MCAODC_22650 and MCAODC_22655 are separated by 4 nucleotides MCAODC_22655 and MCAODC_22660 are separated by 75 nucleotides MCAODC_22660 and MCAODC_22665 are separated by 37 nucleotides MCAODC_22665 and MCAODC_22670 are separated by 147 nucleotides
MCAODC_22640: MCAODC_22640 - Phage antirepressor protein, at 1,283,412 to 1,283,981
_22640
MCAODC_22645: MCAODC_22645 - SAR-endolysin, at 1,284,252 to 1,284,785
_22645
MCAODC_22650: MCAODC_22650 - DUF1327 domain-containing protein, at 1,284,836 to 1,285,180
_22650
MCAODC_22655: MCAODC_22655 - lysis protein, at 1,285,185 to 1,285,400
_22655
MCAODC_22660: MCAODC_22660 - DUF826 domain-containing protein, at 1,285,476 to 1,285,745
_22660
MCAODC_22665: MCAODC_22665 - DUF1378 domain-containing protein, at 1,285,783 to 1,285,965
_22665
MCAODC_22670: MCAODC_22670 - YjhS, at 1,286,113 to 1,287,405
_22670
Position (kb)
1284
1285
1286 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1285.400 kb on + strand at 1285.477 kb on + strand at 1285.477 kb on + strand at 1285.477 kb on + strand at 1285.478 kb on - strand at 1285.478 kb on - strand at 1285.478 kb on - strand at 1285.478 kb on - strand at 1285.478 kb on - strand at 1285.478 kb on - strand at 1285.734 kb on + strand at 1285.871 kb on - strand, within MCAODC_22665 at 1285.872 kb on + strand, within MCAODC_22665 at 1285.874 kb on + strand, within MCAODC_22665 at 1285.890 kb on + strand, within MCAODC_22665 at 1285.891 kb on - strand, within MCAODC_22665 at 1285.913 kb on - strand, within MCAODC_22665 at 1285.913 kb on - strand, within MCAODC_22665 at 1285.937 kb on + strand, within MCAODC_22665 at 1285.985 kb on + strand at 1286.005 kb on + strand at 1286.006 kb on - strand at 1286.047 kb on + strand at 1286.048 kb on - strand at 1286.048 kb on - strand at 1286.049 kb on + strand at 1286.049 kb on + strand at 1286.049 kb on + strand at 1286.115 kb on - strand at 1286.137 kb on + strand at 1286.138 kb on - strand at 1286.140 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,285,400 + +0.9 1,285,477 + +1.1 1,285,477 + -0.3 1,285,477 + -0.1 1,285,478 - +0.2 1,285,478 - -0.2 1,285,478 - +0.8 1,285,478 - -1.0 1,285,478 - -1.6 1,285,478 - +0.6 1,285,734 + +1.4 1,285,871 - MCAODC_22665 0.48 +0.9 1,285,872 + MCAODC_22665 0.49 -3.8 1,285,874 + MCAODC_22665 0.50 -2.5 1,285,890 + MCAODC_22665 0.58 -1.5 1,285,891 - MCAODC_22665 0.59 -1.5 1,285,913 - MCAODC_22665 0.71 -2.4 1,285,913 - MCAODC_22665 0.71 -0.2 1,285,937 + MCAODC_22665 0.84 +0.4 1,285,985 + +0.6 1,286,005 + -3.1 1,286,006 - +0.2 1,286,047 + +0.6 1,286,048 - -0.5 1,286,048 - -1.6 1,286,049 + -1.4 1,286,049 + +0.8 1,286,049 + +0.4 1,286,115 - -0.9 1,286,137 + -1.3 1,286,138 - +0.5 1,286,140 - +0.3
Or see this region's nucleotide sequence