Strain Fitness in Escherichia coli ECRC101 around MCAODC_22160

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgpA1 and MCAODC_22160 overlap by 26 nucleotides MCAODC_22155: gpA1 - terminase, at 1,208,152 to 1,210,077 gpA1 MCAODC_22160: MCAODC_22160 - DNA-packaging protein, at 1,210,052 to 1,210,597 _22160 Position (kb) 1210 1211Strain fitness (log2 ratio) -2 -1 0 1 2at 1209.250 kb on - strand, within gpA1at 1209.671 kb on + strand, within gpA1at 1209.790 kb on - strand, within gpA1at 1209.790 kb on - strand, within gpA1at 1209.797 kb on - strand, within gpA1at 1209.809 kb on + strand, within gpA1at 1209.810 kb on - strand, within gpA1at 1209.962 kb on + strandat 1209.962 kb on + strandat 1210.072 kb on - strandat 1210.216 kb on + strand, within MCAODC_22160at 1210.354 kb on + strand, within MCAODC_22160at 1210.450 kb on - strand, within MCAODC_22160at 1210.457 kb on + strand, within MCAODC_22160at 1210.477 kb on - strand, within MCAODC_22160

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,209,250 - gpA1 MCAODC_22155 0.57 +1.2
1,209,671 + gpA1 MCAODC_22155 0.79 -2.2
1,209,790 - gpA1 MCAODC_22155 0.85 -0.8
1,209,790 - gpA1 MCAODC_22155 0.85 -2.4
1,209,797 - gpA1 MCAODC_22155 0.85 +2.0
1,209,809 + gpA1 MCAODC_22155 0.86 -0.5
1,209,810 - gpA1 MCAODC_22155 0.86 +0.6
1,209,962 + +0.8
1,209,962 + +0.3
1,210,072 - +0.3
1,210,216 + MCAODC_22160 0.30 -2.4
1,210,354 + MCAODC_22160 0.55 +1.0
1,210,450 - MCAODC_22160 0.73 -0.4
1,210,457 + MCAODC_22160 0.74 -0.7
1,210,477 - MCAODC_22160 0.78 +1.3

Or see this region's nucleotide sequence