Strain Fitness in Escherichia coli ECRC101 around MCAODC_21925

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthlyE and ycgN are separated by 206 nucleotidesycgN and ycgM are separated by 91 nucleotidesycgM and ycgL are separated by 71 nucleotides MCAODC_21920: hlyE - hemolysin HlyE, at 1,168,799 to 1,169,710 hlyE MCAODC_21925: ycgN - YcgN family cysteine cluster protein, at 1,169,917 to 1,170,363 ycgN MCAODC_21930: ycgM - fumarylacetoacetate hydrolase family protein, at 1,170,455 to 1,171,114 ycgM MCAODC_21935: ycgL - Protein YcgL, at 1,171,186 to 1,171,479 ycgL Position (kb) 1169 1170 1171Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1169.732 kb on + strandat 1169.741 kb on + strandat 1169.806 kb on - strandat 1169.880 kb on - strandat 1169.947 kb on - strandat 1170.004 kb on - strand, within ycgNat 1170.004 kb on - strand, within ycgNat 1170.104 kb on - strand, within ycgNat 1170.265 kb on - strand, within ycgNat 1170.352 kb on + strandat 1170.353 kb on - strandat 1170.353 kb on - strandat 1170.384 kb on + strandat 1170.396 kb on + strandat 1170.396 kb on + strandat 1170.396 kb on + strandat 1170.397 kb on - strandat 1170.397 kb on - strandat 1170.397 kb on - strandat 1170.453 kb on + strandat 1170.589 kb on + strand, within ycgMat 1170.590 kb on - strand, within ycgMat 1170.590 kb on - strand, within ycgMat 1170.634 kb on + strand, within ycgMat 1170.740 kb on - strand, within ycgMat 1170.980 kb on - strand, within ycgMat 1170.983 kb on - strand, within ycgMat 1171.039 kb on - strand, within ycgMat 1171.043 kb on - strand, within ycgMat 1171.110 kb on + strandat 1171.110 kb on + strandat 1171.111 kb on - strandat 1171.114 kb on + strandat 1171.114 kb on + strandat 1171.165 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,169,732 + +1.7
1,169,741 + -2.3
1,169,806 - +1.0
1,169,880 - -0.4
1,169,947 - +2.1
1,170,004 - ycgN MCAODC_21925 0.19 -2.4
1,170,004 - ycgN MCAODC_21925 0.19 +0.3
1,170,104 - ycgN MCAODC_21925 0.42 -4.0
1,170,265 - ycgN MCAODC_21925 0.78 -1.0
1,170,352 + +0.5
1,170,353 - +2.1
1,170,353 - +0.2
1,170,384 + +1.6
1,170,396 + +0.2
1,170,396 + +1.1
1,170,396 + +0.6
1,170,397 - -0.2
1,170,397 - -3.1
1,170,397 - -3.5
1,170,453 + +0.4
1,170,589 + ycgM MCAODC_21930 0.20 -0.1
1,170,590 - ycgM MCAODC_21930 0.20 -0.1
1,170,590 - ycgM MCAODC_21930 0.20 +0.4
1,170,634 + ycgM MCAODC_21930 0.27 -1.3
1,170,740 - ycgM MCAODC_21930 0.43 +0.4
1,170,980 - ycgM MCAODC_21930 0.80 -1.7
1,170,983 - ycgM MCAODC_21930 0.80 +0.9
1,171,039 - ycgM MCAODC_21930 0.88 -0.4
1,171,043 - ycgM MCAODC_21930 0.89 -0.7
1,171,110 + +0.2
1,171,110 + -1.3
1,171,111 - +0.3
1,171,114 + +0.8
1,171,114 + +1.5
1,171,165 - +0.2

Or see this region's nucleotide sequence