Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nhaB and dsbB are separated by 145 nucleotides dsbB and umuC are separated by 45 nucleotides umuC and umuD overlap by 1 nucleotides umuD and hlyE are separated by 372 nucleotides
MCAODC_21895: nhaB - Na(+)/H(+) antiporter NhaB, at 1,164,476 to 1,166,017
nhaB
MCAODC_21900: dsbB - disulfide bond formation protein DsbB, at 1,166,163 to 1,166,693
dsbB
MCAODC_21905: umuC - DNA polymerase V catalytic protein, at 1,166,739 to 1,168,007
umuC
MCAODC_21910: umuD - Protein UmuD, at 1,168,007 to 1,168,426
umuD
MCAODC_21920: hlyE - hemolysin HlyE, at 1,168,799 to 1,169,710
hlyE
Position (kb)
1166
1167
1168
1169 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1165.763 kb on + strand, within nhaB at 1165.786 kb on + strand, within nhaB at 1165.886 kb on + strand at 1165.988 kb on - strand at 1166.004 kb on + strand at 1166.035 kb on + strand at 1166.036 kb on - strand at 1166.036 kb on - strand at 1166.066 kb on - strand at 1166.139 kb on + strand at 1166.139 kb on + strand at 1166.139 kb on + strand at 1166.139 kb on + strand at 1166.145 kb on + strand at 1166.298 kb on + strand, within dsbB at 1166.314 kb on + strand, within dsbB at 1166.374 kb on - strand, within dsbB at 1166.378 kb on - strand, within dsbB at 1166.397 kb on + strand, within dsbB at 1166.399 kb on + strand, within dsbB at 1166.774 kb on + strand at 1166.862 kb on - strand at 1167.134 kb on + strand, within umuC at 1167.200 kb on - strand, within umuC at 1167.484 kb on - strand, within umuC at 1167.510 kb on + strand, within umuC at 1167.674 kb on + strand, within umuC at 1167.710 kb on + strand, within umuC at 1167.735 kb on + strand, within umuC at 1167.778 kb on + strand, within umuC at 1167.798 kb on - strand, within umuC at 1167.988 kb on - strand at 1168.058 kb on - strand, within umuD at 1168.058 kb on - strand, within umuD at 1168.105 kb on + strand, within umuD at 1168.145 kb on - strand, within umuD at 1168.229 kb on - strand, within umuD at 1168.247 kb on - strand, within umuD at 1168.272 kb on + strand, within umuD at 1168.272 kb on + strand, within umuD at 1168.426 kb on + strand at 1168.430 kb on - strand at 1168.547 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,165,763 + nhaB MCAODC_21895 0.83 -1.8 1,165,786 + nhaB MCAODC_21895 0.85 +0.9 1,165,886 + -0.3 1,165,988 - +0.6 1,166,004 + +1.1 1,166,035 + +1.2 1,166,036 - -0.9 1,166,036 - -0.8 1,166,066 - +1.2 1,166,139 + -1.0 1,166,139 + +0.0 1,166,139 + -0.7 1,166,139 + +1.0 1,166,145 + +0.4 1,166,298 + dsbB MCAODC_21900 0.25 +2.3 1,166,314 + dsbB MCAODC_21900 0.28 -0.0 1,166,374 - dsbB MCAODC_21900 0.40 -3.5 1,166,378 - dsbB MCAODC_21900 0.40 -0.3 1,166,397 + dsbB MCAODC_21900 0.44 -3.2 1,166,399 + dsbB MCAODC_21900 0.44 -1.2 1,166,774 + +0.2 1,166,862 - -0.9 1,167,134 + umuC MCAODC_21905 0.31 +2.6 1,167,200 - umuC MCAODC_21905 0.36 -2.1 1,167,484 - umuC MCAODC_21905 0.59 +0.4 1,167,510 + umuC MCAODC_21905 0.61 -2.3 1,167,674 + umuC MCAODC_21905 0.74 -0.5 1,167,710 + umuC MCAODC_21905 0.77 -1.8 1,167,735 + umuC MCAODC_21905 0.78 -2.3 1,167,778 + umuC MCAODC_21905 0.82 +1.4 1,167,798 - umuC MCAODC_21905 0.83 -0.7 1,167,988 - +0.8 1,168,058 - umuD MCAODC_21910 0.12 -1.2 1,168,058 - umuD MCAODC_21910 0.12 +0.2 1,168,105 + umuD MCAODC_21910 0.23 -0.3 1,168,145 - umuD MCAODC_21910 0.33 -0.3 1,168,229 - umuD MCAODC_21910 0.53 -0.3 1,168,247 - umuD MCAODC_21910 0.57 -0.7 1,168,272 + umuD MCAODC_21910 0.63 -1.8 1,168,272 + umuD MCAODC_21910 0.63 +0.6 1,168,426 + +0.2 1,168,430 - +2.0 1,168,547 - -2.1
Or see this region's nucleotide sequence