Strain Fitness in Escherichia coli ECRC101 around MCAODC_21905

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnhaB and dsbB are separated by 145 nucleotidesdsbB and umuC are separated by 45 nucleotidesumuC and umuD overlap by 1 nucleotidesumuD and hlyE are separated by 372 nucleotides MCAODC_21895: nhaB - Na(+)/H(+) antiporter NhaB, at 1,164,476 to 1,166,017 nhaB MCAODC_21900: dsbB - disulfide bond formation protein DsbB, at 1,166,163 to 1,166,693 dsbB MCAODC_21905: umuC - DNA polymerase V catalytic protein, at 1,166,739 to 1,168,007 umuC MCAODC_21910: umuD - Protein UmuD, at 1,168,007 to 1,168,426 umuD MCAODC_21920: hlyE - hemolysin HlyE, at 1,168,799 to 1,169,710 hlyE Position (kb) 1166 1167 1168 1169Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1165.763 kb on + strand, within nhaBat 1165.786 kb on + strand, within nhaBat 1165.886 kb on + strandat 1165.988 kb on - strandat 1166.004 kb on + strandat 1166.035 kb on + strandat 1166.036 kb on - strandat 1166.036 kb on - strandat 1166.066 kb on - strandat 1166.139 kb on + strandat 1166.139 kb on + strandat 1166.139 kb on + strandat 1166.139 kb on + strandat 1166.145 kb on + strandat 1166.298 kb on + strand, within dsbBat 1166.314 kb on + strand, within dsbBat 1166.374 kb on - strand, within dsbBat 1166.378 kb on - strand, within dsbBat 1166.397 kb on + strand, within dsbBat 1166.399 kb on + strand, within dsbBat 1166.774 kb on + strandat 1166.862 kb on - strandat 1167.134 kb on + strand, within umuCat 1167.200 kb on - strand, within umuCat 1167.484 kb on - strand, within umuCat 1167.510 kb on + strand, within umuCat 1167.674 kb on + strand, within umuCat 1167.710 kb on + strand, within umuCat 1167.735 kb on + strand, within umuCat 1167.778 kb on + strand, within umuCat 1167.798 kb on - strand, within umuCat 1167.988 kb on - strandat 1168.058 kb on - strand, within umuDat 1168.058 kb on - strand, within umuDat 1168.105 kb on + strand, within umuDat 1168.145 kb on - strand, within umuDat 1168.229 kb on - strand, within umuDat 1168.247 kb on - strand, within umuDat 1168.272 kb on + strand, within umuDat 1168.272 kb on + strand, within umuDat 1168.426 kb on + strandat 1168.430 kb on - strandat 1168.547 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,165,763 + nhaB MCAODC_21895 0.83 -1.8
1,165,786 + nhaB MCAODC_21895 0.85 +0.9
1,165,886 + -0.3
1,165,988 - +0.6
1,166,004 + +1.1
1,166,035 + +1.2
1,166,036 - -0.9
1,166,036 - -0.8
1,166,066 - +1.2
1,166,139 + -1.0
1,166,139 + +0.0
1,166,139 + -0.7
1,166,139 + +1.0
1,166,145 + +0.4
1,166,298 + dsbB MCAODC_21900 0.25 +2.3
1,166,314 + dsbB MCAODC_21900 0.28 -0.0
1,166,374 - dsbB MCAODC_21900 0.40 -3.5
1,166,378 - dsbB MCAODC_21900 0.40 -0.3
1,166,397 + dsbB MCAODC_21900 0.44 -3.2
1,166,399 + dsbB MCAODC_21900 0.44 -1.2
1,166,774 + +0.2
1,166,862 - -0.9
1,167,134 + umuC MCAODC_21905 0.31 +2.6
1,167,200 - umuC MCAODC_21905 0.36 -2.1
1,167,484 - umuC MCAODC_21905 0.59 +0.4
1,167,510 + umuC MCAODC_21905 0.61 -2.3
1,167,674 + umuC MCAODC_21905 0.74 -0.5
1,167,710 + umuC MCAODC_21905 0.77 -1.8
1,167,735 + umuC MCAODC_21905 0.78 -2.3
1,167,778 + umuC MCAODC_21905 0.82 +1.4
1,167,798 - umuC MCAODC_21905 0.83 -0.7
1,167,988 - +0.8
1,168,058 - umuD MCAODC_21910 0.12 -1.2
1,168,058 - umuD MCAODC_21910 0.12 +0.2
1,168,105 + umuD MCAODC_21910 0.23 -0.3
1,168,145 - umuD MCAODC_21910 0.33 -0.3
1,168,229 - umuD MCAODC_21910 0.53 -0.3
1,168,247 - umuD MCAODC_21910 0.57 -0.7
1,168,272 + umuD MCAODC_21910 0.63 -1.8
1,168,272 + umuD MCAODC_21910 0.63 +0.6
1,168,426 + +0.2
1,168,430 - +2.0
1,168,547 - -2.1

Or see this region's nucleotide sequence