Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dauA and ychH are separated by 54 nucleotides ychH and pth are separated by 277 nucleotides pth and ychF are separated by 116 nucleotides
MCAODC_21835: dauA - C4-dicarboxylic acid transporter DauA, at 1,149,196 to 1,150,848
dauA
MCAODC_21840: ychH - stress-induced protein YchH, at 1,150,903 to 1,151,181
ychH
MCAODC_21845: pth - aminoacyl-tRNA hydrolase, at 1,151,459 to 1,152,043
pth
MCAODC_21850: ychF - redox-regulated ATPase YchF, at 1,152,160 to 1,153,251
ychF
Position (kb)
1150
1151
1152 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1150.155 kb on + strand, within dauA at 1150.155 kb on + strand, within dauA at 1150.156 kb on - strand, within dauA at 1150.350 kb on + strand, within dauA at 1150.351 kb on - strand, within dauA at 1150.435 kb on - strand, within dauA at 1150.500 kb on + strand, within dauA at 1150.501 kb on - strand, within dauA at 1150.527 kb on - strand, within dauA at 1150.596 kb on - strand, within dauA at 1150.767 kb on + strand at 1150.844 kb on + strand at 1150.844 kb on + strand at 1150.844 kb on + strand at 1150.850 kb on + strand at 1150.897 kb on + strand at 1150.904 kb on + strand at 1150.905 kb on - strand at 1150.905 kb on - strand at 1150.909 kb on - strand at 1150.909 kb on - strand at 1150.909 kb on - strand at 1150.964 kb on + strand, within ychH at 1151.061 kb on - strand, within ychH at 1151.071 kb on - strand, within ychH at 1151.071 kb on - strand, within ychH at 1151.074 kb on - strand, within ychH at 1151.074 kb on - strand, within ychH at 1151.182 kb on - strand at 1151.182 kb on - strand at 1151.220 kb on - strand at 1151.233 kb on - strand at 1151.239 kb on - strand at 1151.243 kb on + strand at 1151.244 kb on - strand at 1151.245 kb on + strand at 1151.265 kb on - strand at 1151.433 kb on + strand at 1151.433 kb on + strand at 1151.437 kb on + strand at 1151.989 kb on + strand at 1152.080 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,150,155 + dauA MCAODC_21835 0.58 +0.3 1,150,155 + dauA MCAODC_21835 0.58 -1.1 1,150,156 - dauA MCAODC_21835 0.58 -2.4 1,150,350 + dauA MCAODC_21835 0.70 +0.7 1,150,351 - dauA MCAODC_21835 0.70 +0.1 1,150,435 - dauA MCAODC_21835 0.75 +1.0 1,150,500 + dauA MCAODC_21835 0.79 +1.3 1,150,501 - dauA MCAODC_21835 0.79 -0.5 1,150,527 - dauA MCAODC_21835 0.81 -0.9 1,150,596 - dauA MCAODC_21835 0.85 +0.5 1,150,767 + -0.0 1,150,844 + -1.3 1,150,844 + -0.5 1,150,844 + +0.3 1,150,850 + -2.3 1,150,897 + -1.7 1,150,904 + +0.6 1,150,905 - -1.9 1,150,905 - -0.1 1,150,909 - +0.5 1,150,909 - +0.5 1,150,909 - -0.7 1,150,964 + ychH MCAODC_21840 0.22 -0.7 1,151,061 - ychH MCAODC_21840 0.57 +0.8 1,151,071 - ychH MCAODC_21840 0.60 -1.5 1,151,071 - ychH MCAODC_21840 0.60 -0.7 1,151,074 - ychH MCAODC_21840 0.61 +0.4 1,151,074 - ychH MCAODC_21840 0.61 -0.3 1,151,182 - -3.4 1,151,182 - +1.8 1,151,220 - -0.0 1,151,233 - -0.6 1,151,239 - +1.2 1,151,243 + -1.8 1,151,244 - +1.3 1,151,245 + -1.0 1,151,265 - +0.2 1,151,433 + -2.9 1,151,433 + -0.0 1,151,437 + +1.3 1,151,989 + -3.8 1,152,080 + +0.3
Or see this region's nucleotide sequence