Strain Fitness in Escherichia coli ECRC101 around MCAODC_21840

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdauA and ychH are separated by 54 nucleotidesychH and pth are separated by 277 nucleotidespth and ychF are separated by 116 nucleotides MCAODC_21835: dauA - C4-dicarboxylic acid transporter DauA, at 1,149,196 to 1,150,848 dauA MCAODC_21840: ychH - stress-induced protein YchH, at 1,150,903 to 1,151,181 ychH MCAODC_21845: pth - aminoacyl-tRNA hydrolase, at 1,151,459 to 1,152,043 pth MCAODC_21850: ychF - redox-regulated ATPase YchF, at 1,152,160 to 1,153,251 ychF Position (kb) 1150 1151 1152Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1150.155 kb on + strand, within dauAat 1150.155 kb on + strand, within dauAat 1150.156 kb on - strand, within dauAat 1150.350 kb on + strand, within dauAat 1150.351 kb on - strand, within dauAat 1150.435 kb on - strand, within dauAat 1150.500 kb on + strand, within dauAat 1150.501 kb on - strand, within dauAat 1150.527 kb on - strand, within dauAat 1150.596 kb on - strand, within dauAat 1150.767 kb on + strandat 1150.844 kb on + strandat 1150.844 kb on + strandat 1150.844 kb on + strandat 1150.850 kb on + strandat 1150.897 kb on + strandat 1150.904 kb on + strandat 1150.905 kb on - strandat 1150.905 kb on - strandat 1150.909 kb on - strandat 1150.909 kb on - strandat 1150.909 kb on - strandat 1150.964 kb on + strand, within ychHat 1151.061 kb on - strand, within ychHat 1151.071 kb on - strand, within ychHat 1151.071 kb on - strand, within ychHat 1151.074 kb on - strand, within ychHat 1151.074 kb on - strand, within ychHat 1151.182 kb on - strandat 1151.182 kb on - strandat 1151.220 kb on - strandat 1151.233 kb on - strandat 1151.239 kb on - strandat 1151.243 kb on + strandat 1151.244 kb on - strandat 1151.245 kb on + strandat 1151.265 kb on - strandat 1151.433 kb on + strandat 1151.433 kb on + strandat 1151.437 kb on + strandat 1151.989 kb on + strandat 1152.080 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,150,155 + dauA MCAODC_21835 0.58 +0.3
1,150,155 + dauA MCAODC_21835 0.58 -1.1
1,150,156 - dauA MCAODC_21835 0.58 -2.4
1,150,350 + dauA MCAODC_21835 0.70 +0.7
1,150,351 - dauA MCAODC_21835 0.70 +0.1
1,150,435 - dauA MCAODC_21835 0.75 +1.0
1,150,500 + dauA MCAODC_21835 0.79 +1.3
1,150,501 - dauA MCAODC_21835 0.79 -0.5
1,150,527 - dauA MCAODC_21835 0.81 -0.9
1,150,596 - dauA MCAODC_21835 0.85 +0.5
1,150,767 + -0.0
1,150,844 + -1.3
1,150,844 + -0.5
1,150,844 + +0.3
1,150,850 + -2.3
1,150,897 + -1.7
1,150,904 + +0.6
1,150,905 - -1.9
1,150,905 - -0.1
1,150,909 - +0.5
1,150,909 - +0.5
1,150,909 - -0.7
1,150,964 + ychH MCAODC_21840 0.22 -0.7
1,151,061 - ychH MCAODC_21840 0.57 +0.8
1,151,071 - ychH MCAODC_21840 0.60 -1.5
1,151,071 - ychH MCAODC_21840 0.60 -0.7
1,151,074 - ychH MCAODC_21840 0.61 +0.4
1,151,074 - ychH MCAODC_21840 0.61 -0.3
1,151,182 - -3.4
1,151,182 - +1.8
1,151,220 - -0.0
1,151,233 - -0.6
1,151,239 - +1.2
1,151,243 + -1.8
1,151,244 - +1.3
1,151,245 + -1.0
1,151,265 - +0.2
1,151,433 + -2.9
1,151,433 + -0.0
1,151,437 + +1.3
1,151,989 + -3.8
1,152,080 + +0.3

Or see this region's nucleotide sequence