Strain Fitness in Escherichia coli ECRC101 around MCAODC_21535

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthipB and MCAODC_21525 are separated by 263 nucleotidesMCAODC_21525 and MCAODC_21530 are separated by 72 nucleotidesMCAODC_21530 and MCAODC_21535 are separated by 22 nucleotidesMCAODC_21535 and MCAODC_21540 overlap by 23 nucleotidesMCAODC_21540 and dicB are separated by 558 nucleotidesdicB and MCAODC_21550 overlap by 4 nucleotides MCAODC_21520: hipB - transcriptional regulator, at 1,091,483 to 1,091,890 hipB MCAODC_21525: MCAODC_21525 - hypothetical protein, at 1,092,154 to 1,092,453 _21525 MCAODC_21530: MCAODC_21530 - Uncharacterized protein YdfC, at 1,092,526 to 1,092,744 _21530 MCAODC_21535: MCAODC_21535 - hypothetical protein, at 1,092,767 to 1,093,174 _21535 MCAODC_21540: MCAODC_21540 - hypothetical protein, at 1,093,152 to 1,093,385 _21540 MCAODC_21545: dicB - Division inhibition protein DicB, at 1,093,944 to 1,094,132 dicB MCAODC_21550: MCAODC_21550 - DUF1482 domain-containing protein, at 1,094,129 to 1,094,320 _21550 Position (kb) 1092 1093 1094Strain fitness (log2 ratio) -2 -1 0 1at 1091.940 kb on + strandat 1092.163 kb on + strandat 1092.163 kb on + strandat 1092.164 kb on - strandat 1092.166 kb on - strandat 1092.195 kb on - strand, within MCAODC_21525at 1092.195 kb on - strand, within MCAODC_21525at 1092.563 kb on - strand, within MCAODC_21530at 1092.742 kb on + strandat 1092.746 kb on - strandat 1092.783 kb on + strandat 1093.132 kb on + strand, within MCAODC_21535at 1093.335 kb on + strand, within MCAODC_21540at 1093.489 kb on + strandat 1093.547 kb on - strandat 1093.547 kb on - strandat 1093.622 kb on + strandat 1093.861 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,091,940 + -0.6
1,092,163 + -2.5
1,092,163 + -0.1
1,092,164 - +0.2
1,092,166 - -0.2
1,092,195 - MCAODC_21525 0.14 -2.2
1,092,195 - MCAODC_21525 0.14 -2.2
1,092,563 - MCAODC_21530 0.17 -1.2
1,092,742 + -2.4
1,092,746 - +0.6
1,092,783 + +0.9
1,093,132 + MCAODC_21535 0.89 +0.1
1,093,335 + MCAODC_21540 0.78 +0.2
1,093,489 + +1.7
1,093,547 - +0.8
1,093,547 - -0.7
1,093,622 + -1.0
1,093,861 - +0.7

Or see this region's nucleotide sequence