Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt eCs1768 and MCAODC_21510 overlap by 29 nucleotides MCAODC_21510 and MCAODC_21515 overlap by 17 nucleotides MCAODC_21515 and hipB are separated by 76 nucleotides hipB and MCAODC_21525 are separated by 263 nucleotides MCAODC_21525 and MCAODC_21530 are separated by 72 nucleotides MCAODC_21530 and MCAODC_21535 are separated by 22 nucleotides
MCAODC_21505: eCs1768 - DNA-binding protein, at 1,089,632 to 1,090,672
eCs1768
MCAODC_21510: MCAODC_21510 - Putative bacterial toxin ydaT, at 1,090,644 to 1,091,195
_21510
MCAODC_21515: MCAODC_21515 - transcriptional regulator, at 1,091,179 to 1,091,406
_21515
MCAODC_21520: hipB - transcriptional regulator, at 1,091,483 to 1,091,890
hipB
MCAODC_21525: MCAODC_21525 - hypothetical protein, at 1,092,154 to 1,092,453
_21525
MCAODC_21530: MCAODC_21530 - Uncharacterized protein YdfC, at 1,092,526 to 1,092,744
_21530
MCAODC_21535: MCAODC_21535 - hypothetical protein, at 1,092,767 to 1,093,174
_21535
Position (kb)
1091
1092 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1090.554 kb on - strand, within eCs1768 at 1090.554 kb on - strand, within eCs1768 at 1090.588 kb on + strand at 1090.589 kb on - strand at 1090.589 kb on - strand at 1090.656 kb on - strand at 1090.709 kb on - strand, within MCAODC_21510 at 1090.709 kb on - strand, within MCAODC_21510 at 1090.712 kb on - strand, within MCAODC_21510 at 1090.718 kb on - strand, within MCAODC_21510 at 1090.748 kb on + strand, within MCAODC_21510 at 1090.962 kb on - strand, within MCAODC_21510 at 1090.996 kb on - strand, within MCAODC_21510 at 1091.252 kb on + strand, within MCAODC_21515 at 1091.388 kb on + strand at 1091.388 kb on + strand at 1091.940 kb on + strand at 1092.163 kb on + strand at 1092.163 kb on + strand at 1092.164 kb on - strand at 1092.166 kb on - strand at 1092.195 kb on - strand, within MCAODC_21525 at 1092.195 kb on - strand, within MCAODC_21525 at 1092.563 kb on - strand, within MCAODC_21530 at 1092.742 kb on + strand at 1092.746 kb on - strand at 1092.783 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,090,554 - eCs1768 MCAODC_21505 0.89 -0.2 1,090,554 - eCs1768 MCAODC_21505 0.89 +0.3 1,090,588 + +0.5 1,090,589 - -2.2 1,090,589 - -0.5 1,090,656 - -0.7 1,090,709 - MCAODC_21510 0.12 +0.1 1,090,709 - MCAODC_21510 0.12 +0.8 1,090,712 - MCAODC_21510 0.12 +0.9 1,090,718 - MCAODC_21510 0.13 -0.4 1,090,748 + MCAODC_21510 0.19 +0.5 1,090,962 - MCAODC_21510 0.58 -3.5 1,090,996 - MCAODC_21510 0.64 -4.0 1,091,252 + MCAODC_21515 0.32 +0.3 1,091,388 + -1.3 1,091,388 + -0.1 1,091,940 + -0.6 1,092,163 + -2.5 1,092,163 + -0.1 1,092,164 - +0.2 1,092,166 - -0.2 1,092,195 - MCAODC_21525 0.14 -2.2 1,092,195 - MCAODC_21525 0.14 -2.2 1,092,563 - MCAODC_21530 0.17 -1.2 1,092,742 + -2.4 1,092,746 - +0.6 1,092,783 + +0.9
Or see this region's nucleotide sequence