Strain Fitness in Escherichia coli ECRC101 around MCAODC_21520

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nteCs1768 and MCAODC_21510 overlap by 29 nucleotidesMCAODC_21510 and MCAODC_21515 overlap by 17 nucleotidesMCAODC_21515 and hipB are separated by 76 nucleotideshipB and MCAODC_21525 are separated by 263 nucleotidesMCAODC_21525 and MCAODC_21530 are separated by 72 nucleotidesMCAODC_21530 and MCAODC_21535 are separated by 22 nucleotides MCAODC_21505: eCs1768 - DNA-binding protein, at 1,089,632 to 1,090,672 eCs1768 MCAODC_21510: MCAODC_21510 - Putative bacterial toxin ydaT, at 1,090,644 to 1,091,195 _21510 MCAODC_21515: MCAODC_21515 - transcriptional regulator, at 1,091,179 to 1,091,406 _21515 MCAODC_21520: hipB - transcriptional regulator, at 1,091,483 to 1,091,890 hipB MCAODC_21525: MCAODC_21525 - hypothetical protein, at 1,092,154 to 1,092,453 _21525 MCAODC_21530: MCAODC_21530 - Uncharacterized protein YdfC, at 1,092,526 to 1,092,744 _21530 MCAODC_21535: MCAODC_21535 - hypothetical protein, at 1,092,767 to 1,093,174 _21535 Position (kb) 1091 1092Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1090.554 kb on - strand, within eCs1768at 1090.554 kb on - strand, within eCs1768at 1090.588 kb on + strandat 1090.589 kb on - strandat 1090.589 kb on - strandat 1090.656 kb on - strandat 1090.709 kb on - strand, within MCAODC_21510at 1090.709 kb on - strand, within MCAODC_21510at 1090.712 kb on - strand, within MCAODC_21510at 1090.718 kb on - strand, within MCAODC_21510at 1090.748 kb on + strand, within MCAODC_21510at 1090.962 kb on - strand, within MCAODC_21510at 1090.996 kb on - strand, within MCAODC_21510at 1091.252 kb on + strand, within MCAODC_21515at 1091.388 kb on + strandat 1091.388 kb on + strandat 1091.940 kb on + strandat 1092.163 kb on + strandat 1092.163 kb on + strandat 1092.164 kb on - strandat 1092.166 kb on - strandat 1092.195 kb on - strand, within MCAODC_21525at 1092.195 kb on - strand, within MCAODC_21525at 1092.563 kb on - strand, within MCAODC_21530at 1092.742 kb on + strandat 1092.746 kb on - strandat 1092.783 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,090,554 - eCs1768 MCAODC_21505 0.89 -0.2
1,090,554 - eCs1768 MCAODC_21505 0.89 +0.3
1,090,588 + +0.5
1,090,589 - -2.2
1,090,589 - -0.5
1,090,656 - -0.7
1,090,709 - MCAODC_21510 0.12 +0.1
1,090,709 - MCAODC_21510 0.12 +0.8
1,090,712 - MCAODC_21510 0.12 +0.9
1,090,718 - MCAODC_21510 0.13 -0.4
1,090,748 + MCAODC_21510 0.19 +0.5
1,090,962 - MCAODC_21510 0.58 -3.5
1,090,996 - MCAODC_21510 0.64 -4.0
1,091,252 + MCAODC_21515 0.32 +0.3
1,091,388 + -1.3
1,091,388 + -0.1
1,091,940 + -0.6
1,092,163 + -2.5
1,092,163 + -0.1
1,092,164 - +0.2
1,092,166 - -0.2
1,092,195 - MCAODC_21525 0.14 -2.2
1,092,195 - MCAODC_21525 0.14 -2.2
1,092,563 - MCAODC_21530 0.17 -1.2
1,092,742 + -2.4
1,092,746 - +0.6
1,092,783 + +0.9

Or see this region's nucleotide sequence