Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_21495 and MCAODC_21500 are separated by 186 nucleotides MCAODC_21500 and eCs1768 are separated by 31 nucleotides eCs1768 and MCAODC_21510 overlap by 29 nucleotides MCAODC_21510 and MCAODC_21515 overlap by 17 nucleotides MCAODC_21515 and hipB are separated by 76 nucleotides
MCAODC_21495: MCAODC_21495 - DNA-binding protein, at 1,088,410 to 1,088,991
_21495
MCAODC_21500: MCAODC_21500 - replication protein, at 1,089,178 to 1,089,600
_21500
MCAODC_21505: eCs1768 - DNA-binding protein, at 1,089,632 to 1,090,672
eCs1768
MCAODC_21510: MCAODC_21510 - Putative bacterial toxin ydaT, at 1,090,644 to 1,091,195
_21510
MCAODC_21515: MCAODC_21515 - transcriptional regulator, at 1,091,179 to 1,091,406
_21515
MCAODC_21520: hipB - transcriptional regulator, at 1,091,483 to 1,091,890
hipB
Position (kb)
1089
1090
1091 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1088.740 kb on - strand, within MCAODC_21495 at 1089.002 kb on + strand at 1089.210 kb on - strand at 1089.210 kb on - strand at 1089.301 kb on - strand, within MCAODC_21500 at 1089.304 kb on - strand, within MCAODC_21500 at 1089.304 kb on - strand, within MCAODC_21500 at 1089.304 kb on - strand, within MCAODC_21500 at 1089.434 kb on + strand, within MCAODC_21500 at 1089.439 kb on - strand, within MCAODC_21500 at 1089.439 kb on - strand, within MCAODC_21500 at 1089.890 kb on + strand, within eCs1768 at 1089.891 kb on - strand, within eCs1768 at 1089.891 kb on - strand, within eCs1768 at 1089.955 kb on - strand, within eCs1768 at 1089.986 kb on - strand, within eCs1768 at 1090.107 kb on - strand, within eCs1768 at 1090.172 kb on - strand, within eCs1768 at 1090.185 kb on - strand, within eCs1768 at 1090.409 kb on + strand, within eCs1768 at 1090.554 kb on - strand, within eCs1768 at 1090.554 kb on - strand, within eCs1768 at 1090.588 kb on + strand at 1090.589 kb on - strand at 1090.589 kb on - strand at 1090.656 kb on - strand at 1090.709 kb on - strand, within MCAODC_21510 at 1090.709 kb on - strand, within MCAODC_21510 at 1090.712 kb on - strand, within MCAODC_21510 at 1090.718 kb on - strand, within MCAODC_21510 at 1090.748 kb on + strand, within MCAODC_21510 at 1090.962 kb on - strand, within MCAODC_21510 at 1090.996 kb on - strand, within MCAODC_21510 at 1091.252 kb on + strand, within MCAODC_21515 at 1091.388 kb on + strand at 1091.388 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,088,740 - MCAODC_21495 0.57 -0.8 1,089,002 + +0.3 1,089,210 - +0.4 1,089,210 - +0.8 1,089,301 - MCAODC_21500 0.29 -0.2 1,089,304 - MCAODC_21500 0.30 -0.5 1,089,304 - MCAODC_21500 0.30 -0.4 1,089,304 - MCAODC_21500 0.30 +0.6 1,089,434 + MCAODC_21500 0.61 -0.7 1,089,439 - MCAODC_21500 0.62 +1.1 1,089,439 - MCAODC_21500 0.62 -0.0 1,089,890 + eCs1768 MCAODC_21505 0.25 +0.6 1,089,891 - eCs1768 MCAODC_21505 0.25 +0.3 1,089,891 - eCs1768 MCAODC_21505 0.25 +0.2 1,089,955 - eCs1768 MCAODC_21505 0.31 +1.0 1,089,986 - eCs1768 MCAODC_21505 0.34 +1.2 1,090,107 - eCs1768 MCAODC_21505 0.46 +1.3 1,090,172 - eCs1768 MCAODC_21505 0.52 +0.7 1,090,185 - eCs1768 MCAODC_21505 0.53 -0.1 1,090,409 + eCs1768 MCAODC_21505 0.75 -2.5 1,090,554 - eCs1768 MCAODC_21505 0.89 -0.2 1,090,554 - eCs1768 MCAODC_21505 0.89 +0.3 1,090,588 + +0.5 1,090,589 - -2.2 1,090,589 - -0.5 1,090,656 - -0.7 1,090,709 - MCAODC_21510 0.12 +0.1 1,090,709 - MCAODC_21510 0.12 +0.8 1,090,712 - MCAODC_21510 0.12 +0.9 1,090,718 - MCAODC_21510 0.13 -0.4 1,090,748 + MCAODC_21510 0.19 +0.5 1,090,962 - MCAODC_21510 0.58 -3.5 1,090,996 - MCAODC_21510 0.64 -4.0 1,091,252 + MCAODC_21515 0.32 +0.3 1,091,388 + -1.3 1,091,388 + -0.1
Or see this region's nucleotide sequence