Strain Fitness in Escherichia coli ECRC101 around MCAODC_21505

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_21495 and MCAODC_21500 are separated by 186 nucleotidesMCAODC_21500 and eCs1768 are separated by 31 nucleotideseCs1768 and MCAODC_21510 overlap by 29 nucleotidesMCAODC_21510 and MCAODC_21515 overlap by 17 nucleotidesMCAODC_21515 and hipB are separated by 76 nucleotides MCAODC_21495: MCAODC_21495 - DNA-binding protein, at 1,088,410 to 1,088,991 _21495 MCAODC_21500: MCAODC_21500 - replication protein, at 1,089,178 to 1,089,600 _21500 MCAODC_21505: eCs1768 - DNA-binding protein, at 1,089,632 to 1,090,672 eCs1768 MCAODC_21510: MCAODC_21510 - Putative bacterial toxin ydaT, at 1,090,644 to 1,091,195 _21510 MCAODC_21515: MCAODC_21515 - transcriptional regulator, at 1,091,179 to 1,091,406 _21515 MCAODC_21520: hipB - transcriptional regulator, at 1,091,483 to 1,091,890 hipB Position (kb) 1089 1090 1091Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1088.740 kb on - strand, within MCAODC_21495at 1089.002 kb on + strandat 1089.210 kb on - strandat 1089.210 kb on - strandat 1089.301 kb on - strand, within MCAODC_21500at 1089.304 kb on - strand, within MCAODC_21500at 1089.304 kb on - strand, within MCAODC_21500at 1089.304 kb on - strand, within MCAODC_21500at 1089.434 kb on + strand, within MCAODC_21500at 1089.439 kb on - strand, within MCAODC_21500at 1089.439 kb on - strand, within MCAODC_21500at 1089.890 kb on + strand, within eCs1768at 1089.891 kb on - strand, within eCs1768at 1089.891 kb on - strand, within eCs1768at 1089.955 kb on - strand, within eCs1768at 1089.986 kb on - strand, within eCs1768at 1090.107 kb on - strand, within eCs1768at 1090.172 kb on - strand, within eCs1768at 1090.185 kb on - strand, within eCs1768at 1090.409 kb on + strand, within eCs1768at 1090.554 kb on - strand, within eCs1768at 1090.554 kb on - strand, within eCs1768at 1090.588 kb on + strandat 1090.589 kb on - strandat 1090.589 kb on - strandat 1090.656 kb on - strandat 1090.709 kb on - strand, within MCAODC_21510at 1090.709 kb on - strand, within MCAODC_21510at 1090.712 kb on - strand, within MCAODC_21510at 1090.718 kb on - strand, within MCAODC_21510at 1090.748 kb on + strand, within MCAODC_21510at 1090.962 kb on - strand, within MCAODC_21510at 1090.996 kb on - strand, within MCAODC_21510at 1091.252 kb on + strand, within MCAODC_21515at 1091.388 kb on + strandat 1091.388 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,088,740 - MCAODC_21495 0.57 -0.8
1,089,002 + +0.3
1,089,210 - +0.4
1,089,210 - +0.8
1,089,301 - MCAODC_21500 0.29 -0.2
1,089,304 - MCAODC_21500 0.30 -0.5
1,089,304 - MCAODC_21500 0.30 -0.4
1,089,304 - MCAODC_21500 0.30 +0.6
1,089,434 + MCAODC_21500 0.61 -0.7
1,089,439 - MCAODC_21500 0.62 +1.1
1,089,439 - MCAODC_21500 0.62 -0.0
1,089,890 + eCs1768 MCAODC_21505 0.25 +0.6
1,089,891 - eCs1768 MCAODC_21505 0.25 +0.3
1,089,891 - eCs1768 MCAODC_21505 0.25 +0.2
1,089,955 - eCs1768 MCAODC_21505 0.31 +1.0
1,089,986 - eCs1768 MCAODC_21505 0.34 +1.2
1,090,107 - eCs1768 MCAODC_21505 0.46 +1.3
1,090,172 - eCs1768 MCAODC_21505 0.52 +0.7
1,090,185 - eCs1768 MCAODC_21505 0.53 -0.1
1,090,409 + eCs1768 MCAODC_21505 0.75 -2.5
1,090,554 - eCs1768 MCAODC_21505 0.89 -0.2
1,090,554 - eCs1768 MCAODC_21505 0.89 +0.3
1,090,588 + +0.5
1,090,589 - -2.2
1,090,589 - -0.5
1,090,656 - -0.7
1,090,709 - MCAODC_21510 0.12 +0.1
1,090,709 - MCAODC_21510 0.12 +0.8
1,090,712 - MCAODC_21510 0.12 +0.9
1,090,718 - MCAODC_21510 0.13 -0.4
1,090,748 + MCAODC_21510 0.19 +0.5
1,090,962 - MCAODC_21510 0.58 -3.5
1,090,996 - MCAODC_21510 0.64 -4.0
1,091,252 + MCAODC_21515 0.32 +0.3
1,091,388 + -1.3
1,091,388 + -0.1

Or see this region's nucleotide sequence