Strain Fitness in Escherichia coli ECRC101 around MCAODC_21490

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpaa and MCAODC_21490 are separated by 698 nucleotidesMCAODC_21490 and MCAODC_21495 overlap by 4 nucleotidesMCAODC_21495 and MCAODC_21500 are separated by 186 nucleotides MCAODC_21485: paa - outer membrane adhesin Paa, at 1,086,792 to 1,087,550 paa MCAODC_21490: MCAODC_21490 - hypothetical protein, at 1,088,249 to 1,088,413 _21490 MCAODC_21495: MCAODC_21495 - DNA-binding protein, at 1,088,410 to 1,088,991 _21495 MCAODC_21500: MCAODC_21500 - replication protein, at 1,089,178 to 1,089,600 _21500 Position (kb) 1088 1089Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1087.416 kb on - strand, within paaat 1087.483 kb on + strandat 1088.188 kb on - strandat 1088.188 kb on - strandat 1088.191 kb on + strandat 1088.191 kb on + strandat 1088.192 kb on - strandat 1088.192 kb on - strandat 1088.367 kb on - strand, within MCAODC_21490at 1088.379 kb on - strand, within MCAODC_21490at 1088.379 kb on - strand, within MCAODC_21490at 1088.382 kb on - strand, within MCAODC_21490at 1088.625 kb on + strand, within MCAODC_21495at 1088.740 kb on - strand, within MCAODC_21495at 1089.002 kb on + strandat 1089.210 kb on - strandat 1089.210 kb on - strandat 1089.301 kb on - strand, within MCAODC_21500at 1089.304 kb on - strand, within MCAODC_21500at 1089.304 kb on - strand, within MCAODC_21500at 1089.304 kb on - strand, within MCAODC_21500

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,087,416 - paa MCAODC_21485 0.82 -2.4
1,087,483 + +0.8
1,088,188 - -0.8
1,088,188 - +0.7
1,088,191 + -5.0
1,088,191 + +0.6
1,088,192 - +0.4
1,088,192 - -0.8
1,088,367 - MCAODC_21490 0.72 +0.2
1,088,379 - MCAODC_21490 0.79 +0.2
1,088,379 - MCAODC_21490 0.79 +1.6
1,088,382 - MCAODC_21490 0.81 +0.6
1,088,625 + MCAODC_21495 0.37 +0.2
1,088,740 - MCAODC_21495 0.57 -0.8
1,089,002 + +0.3
1,089,210 - +0.4
1,089,210 - +0.8
1,089,301 - MCAODC_21500 0.29 -0.2
1,089,304 - MCAODC_21500 0.30 -0.5
1,089,304 - MCAODC_21500 0.30 -0.4
1,089,304 - MCAODC_21500 0.30 +0.6

Or see this region's nucleotide sequence