Strain Fitness in Escherichia coli ECRC101 around MCAODC_21460

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_21450 and rusA are separated by 8 nucleotidesrusA and MCAODC_21460 are separated by 12 nucleotidesMCAODC_21460 and MCAODC_21465 are separated by 1 nucleotidesMCAODC_21465 and MCAODC_21470 are separated by 69 nucleotidesMCAODC_21470 and hokD1 are separated by 220 nucleotides MCAODC_21450: MCAODC_21450 - DUF1133 domain-containing protein, at 1,083,516 to 1,084,046 _21450 MCAODC_21455: rusA - Endodeoxyribonuclease RusA, at 1,084,055 to 1,084,414 rusA MCAODC_21460: MCAODC_21460 - DUF968 domain-containing protein, at 1,084,427 to 1,085,473 _21460 MCAODC_21465: MCAODC_21465 - hypothetical protein, at 1,085,475 to 1,085,753 _21465 MCAODC_21470: MCAODC_21470 - Hypothetical rem protein, at 1,085,823 to 1,086,080 _21470 MCAODC_21475: hokD1 - Protein HokD, at 1,086,301 to 1,086,513 hokD1 Position (kb) 1084 1085 1086Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1083.457 kb on - strandat 1083.541 kb on - strandat 1083.544 kb on + strandat 1083.545 kb on - strandat 1083.545 kb on - strandat 1083.545 kb on - strandat 1083.545 kb on - strandat 1083.651 kb on - strand, within MCAODC_21450at 1083.671 kb on - strand, within MCAODC_21450at 1083.687 kb on - strand, within MCAODC_21450at 1083.758 kb on + strand, within MCAODC_21450at 1083.759 kb on - strand, within MCAODC_21450at 1083.867 kb on - strand, within MCAODC_21450at 1083.941 kb on - strand, within MCAODC_21450at 1083.941 kb on - strand, within MCAODC_21450at 1083.941 kb on - strand, within MCAODC_21450at 1084.006 kb on - strandat 1084.041 kb on + strandat 1084.047 kb on - strandat 1084.047 kb on - strandat 1084.047 kb on - strandat 1084.051 kb on - strandat 1084.338 kb on - strand, within rusAat 1084.344 kb on + strand, within rusAat 1084.832 kb on + strand, within MCAODC_21460at 1084.832 kb on + strand, within MCAODC_21460at 1084.860 kb on - strand, within MCAODC_21460at 1084.991 kb on + strand, within MCAODC_21460at 1085.016 kb on - strand, within MCAODC_21460at 1085.419 kb on + strandat 1085.463 kb on - strandat 1085.463 kb on - strandat 1085.594 kb on - strand, within MCAODC_21465at 1085.594 kb on - strand, within MCAODC_21465at 1085.812 kb on - strandat 1085.947 kb on - strand, within MCAODC_21470at 1085.987 kb on + strand, within MCAODC_21470at 1085.990 kb on + strand, within MCAODC_21470at 1086.033 kb on - strand, within MCAODC_21470at 1086.033 kb on - strand, within MCAODC_21470at 1086.103 kb on + strandat 1086.456 kb on + strand, within hokD1

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,083,457 - -1.2
1,083,541 - -1.7
1,083,544 + +0.1
1,083,545 - -0.7
1,083,545 - +1.7
1,083,545 - -0.2
1,083,545 - +1.0
1,083,651 - MCAODC_21450 0.25 +0.1
1,083,671 - MCAODC_21450 0.29 -2.4
1,083,687 - MCAODC_21450 0.32 +0.2
1,083,758 + MCAODC_21450 0.46 +1.1
1,083,759 - MCAODC_21450 0.46 +0.7
1,083,867 - MCAODC_21450 0.66 +0.2
1,083,941 - MCAODC_21450 0.80 -0.1
1,083,941 - MCAODC_21450 0.80 -0.7
1,083,941 - MCAODC_21450 0.80 -0.6
1,084,006 - +0.8
1,084,041 + +0.8
1,084,047 - -1.9
1,084,047 - +0.2
1,084,047 - -1.3
1,084,051 - -3.4
1,084,338 - rusA MCAODC_21455 0.79 +1.1
1,084,344 + rusA MCAODC_21455 0.80 +0.5
1,084,832 + MCAODC_21460 0.39 -3.2
1,084,832 + MCAODC_21460 0.39 -1.6
1,084,860 - MCAODC_21460 0.41 +1.2
1,084,991 + MCAODC_21460 0.54 -1.8
1,085,016 - MCAODC_21460 0.56 -0.2
1,085,419 + +2.0
1,085,463 - +1.5
1,085,463 - -0.4
1,085,594 - MCAODC_21465 0.43 +0.3
1,085,594 - MCAODC_21465 0.43 -1.5
1,085,812 - +0.5
1,085,947 - MCAODC_21470 0.48 +1.1
1,085,987 + MCAODC_21470 0.64 -0.2
1,085,990 + MCAODC_21470 0.65 +1.1
1,086,033 - MCAODC_21470 0.81 +1.6
1,086,033 - MCAODC_21470 0.81 +0.5
1,086,103 + +2.3
1,086,456 + hokD1 MCAODC_21475 0.73 +1.6

Or see this region's nucleotide sequence