Strain Fitness in Escherichia coli ECRC101 around MCAODC_21225

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_21215 and MCAODC_21220 are separated by 18 nucleotidesMCAODC_21220 and yehP overlap by 8 nucleotidesyehP and yehQ overlap by 4 nucleotides MCAODC_21215: MCAODC_21215 - Protein, at 1,045,237 to 1,046,766 _21215 MCAODC_21220: MCAODC_21220 - Protein, at 1,046,785 to 1,047,516 _21220 MCAODC_21225: yehP - Uncharacterized protein YehP, at 1,047,509 to 1,048,645 yehP MCAODC_21230: yehQ - Protein YehQ, at 1,048,642 to 1,050,645 yehQ Position (kb) 1047 1048 1049Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1046.639 kb on + strandat 1046.735 kb on + strandat 1046.764 kb on + strandat 1046.807 kb on + strandat 1046.807 kb on + strandat 1046.807 kb on + strandat 1046.807 kb on + strandat 1046.808 kb on - strandat 1046.809 kb on + strandat 1046.809 kb on + strandat 1046.809 kb on + strandat 1046.810 kb on - strandat 1046.810 kb on - strandat 1046.955 kb on + strand, within MCAODC_21220at 1046.955 kb on + strand, within MCAODC_21220at 1046.955 kb on + strand, within MCAODC_21220at 1046.956 kb on - strand, within MCAODC_21220at 1046.990 kb on + strand, within MCAODC_21220at 1046.990 kb on + strand, within MCAODC_21220at 1046.994 kb on + strand, within MCAODC_21220at 1046.995 kb on - strand, within MCAODC_21220at 1047.041 kb on + strand, within MCAODC_21220at 1047.269 kb on + strand, within MCAODC_21220at 1047.295 kb on - strand, within MCAODC_21220at 1047.621 kb on + strandat 1047.734 kb on - strand, within yehPat 1047.786 kb on + strand, within yehPat 1047.838 kb on + strand, within yehPat 1047.839 kb on - strand, within yehPat 1048.018 kb on + strand, within yehPat 1048.019 kb on - strand, within yehPat 1048.019 kb on - strand, within yehPat 1048.100 kb on + strand, within yehPat 1048.100 kb on + strand, within yehPat 1048.101 kb on - strand, within yehPat 1048.120 kb on + strand, within yehPat 1048.177 kb on - strand, within yehPat 1048.177 kb on - strand, within yehPat 1048.239 kb on + strand, within yehPat 1048.240 kb on - strand, within yehPat 1048.253 kb on - strand, within yehPat 1048.541 kb on + strandat 1048.541 kb on + strandat 1048.542 kb on - strandat 1048.542 kb on - strandat 1048.668 kb on - strandat 1048.728 kb on + strandat 1048.898 kb on + strand, within yehQat 1048.904 kb on - strand, within yehQat 1049.145 kb on + strand, within yehQat 1049.146 kb on - strand, within yehQat 1049.224 kb on - strand, within yehQat 1049.311 kb on + strand, within yehQat 1049.311 kb on + strand, within yehQat 1049.312 kb on - strand, within yehQat 1049.312 kb on - strand, within yehQat 1049.312 kb on - strand, within yehQat 1049.324 kb on + strand, within yehQat 1049.325 kb on - strand, within yehQat 1049.371 kb on + strand, within yehQat 1049.371 kb on + strand, within yehQat 1049.372 kb on - strand, within yehQat 1049.492 kb on - strand, within yehQat 1049.510 kb on + strand, within yehQat 1049.541 kb on - strand, within yehQ

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,046,639 + +0.8
1,046,735 + +1.5
1,046,764 + -0.5
1,046,807 + -3.2
1,046,807 + -0.3
1,046,807 + -0.0
1,046,807 + -0.6
1,046,808 - +0.6
1,046,809 + -1.6
1,046,809 + +0.3
1,046,809 + +0.5
1,046,810 - +0.2
1,046,810 - -1.6
1,046,955 + MCAODC_21220 0.23 -0.5
1,046,955 + MCAODC_21220 0.23 +0.2
1,046,955 + MCAODC_21220 0.23 +0.9
1,046,956 - MCAODC_21220 0.23 -0.6
1,046,990 + MCAODC_21220 0.28 -3.2
1,046,990 + MCAODC_21220 0.28 +1.3
1,046,994 + MCAODC_21220 0.29 +4.6
1,046,995 - MCAODC_21220 0.29 -1.1
1,047,041 + MCAODC_21220 0.35 +0.8
1,047,269 + MCAODC_21220 0.66 -0.2
1,047,295 - MCAODC_21220 0.70 -0.1
1,047,621 + -0.6
1,047,734 - yehP MCAODC_21225 0.20 -0.2
1,047,786 + yehP MCAODC_21225 0.24 -1.7
1,047,838 + yehP MCAODC_21225 0.29 +1.2
1,047,839 - yehP MCAODC_21225 0.29 +3.2
1,048,018 + yehP MCAODC_21225 0.45 -1.7
1,048,019 - yehP MCAODC_21225 0.45 +1.2
1,048,019 - yehP MCAODC_21225 0.45 +0.0
1,048,100 + yehP MCAODC_21225 0.52 +0.4
1,048,100 + yehP MCAODC_21225 0.52 -0.6
1,048,101 - yehP MCAODC_21225 0.52 +0.2
1,048,120 + yehP MCAODC_21225 0.54 -0.7
1,048,177 - yehP MCAODC_21225 0.59 +0.9
1,048,177 - yehP MCAODC_21225 0.59 +3.0
1,048,239 + yehP MCAODC_21225 0.64 +1.2
1,048,240 - yehP MCAODC_21225 0.64 -0.3
1,048,253 - yehP MCAODC_21225 0.65 +1.0
1,048,541 + -0.6
1,048,541 + +1.3
1,048,542 - +1.7
1,048,542 - -2.8
1,048,668 - -0.5
1,048,728 + -0.4
1,048,898 + yehQ MCAODC_21230 0.13 +0.1
1,048,904 - yehQ MCAODC_21230 0.13 -0.4
1,049,145 + yehQ MCAODC_21230 0.25 +1.2
1,049,146 - yehQ MCAODC_21230 0.25 +0.3
1,049,224 - yehQ MCAODC_21230 0.29 -2.6
1,049,311 + yehQ MCAODC_21230 0.33 -1.0
1,049,311 + yehQ MCAODC_21230 0.33 +1.1
1,049,312 - yehQ MCAODC_21230 0.33 +3.1
1,049,312 - yehQ MCAODC_21230 0.33 -4.1
1,049,312 - yehQ MCAODC_21230 0.33 +0.1
1,049,324 + yehQ MCAODC_21230 0.34 -0.3
1,049,325 - yehQ MCAODC_21230 0.34 +0.9
1,049,371 + yehQ MCAODC_21230 0.36 -0.2
1,049,371 + yehQ MCAODC_21230 0.36 +0.2
1,049,372 - yehQ MCAODC_21230 0.36 -0.5
1,049,492 - yehQ MCAODC_21230 0.42 +1.2
1,049,510 + yehQ MCAODC_21230 0.43 +0.2
1,049,541 - yehQ MCAODC_21230 0.45 -0.3

Or see this region's nucleotide sequence