Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_21215 and MCAODC_21220 are separated by 18 nucleotides MCAODC_21220 and yehP overlap by 8 nucleotides yehP and yehQ overlap by 4 nucleotides
MCAODC_21215: MCAODC_21215 - Protein, at 1,045,237 to 1,046,766
_21215
MCAODC_21220: MCAODC_21220 - Protein, at 1,046,785 to 1,047,516
_21220
MCAODC_21225: yehP - Uncharacterized protein YehP, at 1,047,509 to 1,048,645
yehP
MCAODC_21230: yehQ - Protein YehQ, at 1,048,642 to 1,050,645
yehQ
Position (kb)
1047
1048
1049 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 1046.639 kb on + strand at 1046.735 kb on + strand at 1046.764 kb on + strand at 1046.807 kb on + strand at 1046.807 kb on + strand at 1046.807 kb on + strand at 1046.807 kb on + strand at 1046.808 kb on - strand at 1046.809 kb on + strand at 1046.809 kb on + strand at 1046.809 kb on + strand at 1046.810 kb on - strand at 1046.810 kb on - strand at 1046.955 kb on + strand, within MCAODC_21220 at 1046.955 kb on + strand, within MCAODC_21220 at 1046.955 kb on + strand, within MCAODC_21220 at 1046.956 kb on - strand, within MCAODC_21220 at 1046.990 kb on + strand, within MCAODC_21220 at 1046.990 kb on + strand, within MCAODC_21220 at 1046.994 kb on + strand, within MCAODC_21220 at 1046.995 kb on - strand, within MCAODC_21220 at 1047.041 kb on + strand, within MCAODC_21220 at 1047.269 kb on + strand, within MCAODC_21220 at 1047.295 kb on - strand, within MCAODC_21220 at 1047.621 kb on + strand at 1047.734 kb on - strand, within yehP at 1047.786 kb on + strand, within yehP at 1047.838 kb on + strand, within yehP at 1047.839 kb on - strand, within yehP at 1048.018 kb on + strand, within yehP at 1048.019 kb on - strand, within yehP at 1048.019 kb on - strand, within yehP at 1048.100 kb on + strand, within yehP at 1048.100 kb on + strand, within yehP at 1048.101 kb on - strand, within yehP at 1048.120 kb on + strand, within yehP at 1048.177 kb on - strand, within yehP at 1048.177 kb on - strand, within yehP at 1048.239 kb on + strand, within yehP at 1048.240 kb on - strand, within yehP at 1048.253 kb on - strand, within yehP at 1048.541 kb on + strand at 1048.541 kb on + strand at 1048.542 kb on - strand at 1048.542 kb on - strand at 1048.668 kb on - strand at 1048.728 kb on + strand at 1048.898 kb on + strand, within yehQ at 1048.904 kb on - strand, within yehQ at 1049.145 kb on + strand, within yehQ at 1049.146 kb on - strand, within yehQ at 1049.224 kb on - strand, within yehQ at 1049.311 kb on + strand, within yehQ at 1049.311 kb on + strand, within yehQ at 1049.312 kb on - strand, within yehQ at 1049.312 kb on - strand, within yehQ at 1049.312 kb on - strand, within yehQ at 1049.324 kb on + strand, within yehQ at 1049.325 kb on - strand, within yehQ at 1049.371 kb on + strand, within yehQ at 1049.371 kb on + strand, within yehQ at 1049.372 kb on - strand, within yehQ at 1049.492 kb on - strand, within yehQ at 1049.510 kb on + strand, within yehQ at 1049.541 kb on - strand, within yehQ
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,046,639 + +0.8 1,046,735 + +1.5 1,046,764 + -0.5 1,046,807 + -3.2 1,046,807 + -0.3 1,046,807 + -0.0 1,046,807 + -0.6 1,046,808 - +0.6 1,046,809 + -1.6 1,046,809 + +0.3 1,046,809 + +0.5 1,046,810 - +0.2 1,046,810 - -1.6 1,046,955 + MCAODC_21220 0.23 -0.5 1,046,955 + MCAODC_21220 0.23 +0.2 1,046,955 + MCAODC_21220 0.23 +0.9 1,046,956 - MCAODC_21220 0.23 -0.6 1,046,990 + MCAODC_21220 0.28 -3.2 1,046,990 + MCAODC_21220 0.28 +1.3 1,046,994 + MCAODC_21220 0.29 +4.6 1,046,995 - MCAODC_21220 0.29 -1.1 1,047,041 + MCAODC_21220 0.35 +0.8 1,047,269 + MCAODC_21220 0.66 -0.2 1,047,295 - MCAODC_21220 0.70 -0.1 1,047,621 + -0.6 1,047,734 - yehP MCAODC_21225 0.20 -0.2 1,047,786 + yehP MCAODC_21225 0.24 -1.7 1,047,838 + yehP MCAODC_21225 0.29 +1.2 1,047,839 - yehP MCAODC_21225 0.29 +3.2 1,048,018 + yehP MCAODC_21225 0.45 -1.7 1,048,019 - yehP MCAODC_21225 0.45 +1.2 1,048,019 - yehP MCAODC_21225 0.45 +0.0 1,048,100 + yehP MCAODC_21225 0.52 +0.4 1,048,100 + yehP MCAODC_21225 0.52 -0.6 1,048,101 - yehP MCAODC_21225 0.52 +0.2 1,048,120 + yehP MCAODC_21225 0.54 -0.7 1,048,177 - yehP MCAODC_21225 0.59 +0.9 1,048,177 - yehP MCAODC_21225 0.59 +3.0 1,048,239 + yehP MCAODC_21225 0.64 +1.2 1,048,240 - yehP MCAODC_21225 0.64 -0.3 1,048,253 - yehP MCAODC_21225 0.65 +1.0 1,048,541 + -0.6 1,048,541 + +1.3 1,048,542 - +1.7 1,048,542 - -2.8 1,048,668 - -0.5 1,048,728 + -0.4 1,048,898 + yehQ MCAODC_21230 0.13 +0.1 1,048,904 - yehQ MCAODC_21230 0.13 -0.4 1,049,145 + yehQ MCAODC_21230 0.25 +1.2 1,049,146 - yehQ MCAODC_21230 0.25 +0.3 1,049,224 - yehQ MCAODC_21230 0.29 -2.6 1,049,311 + yehQ MCAODC_21230 0.33 -1.0 1,049,311 + yehQ MCAODC_21230 0.33 +1.1 1,049,312 - yehQ MCAODC_21230 0.33 +3.1 1,049,312 - yehQ MCAODC_21230 0.33 -4.1 1,049,312 - yehQ MCAODC_21230 0.33 +0.1 1,049,324 + yehQ MCAODC_21230 0.34 -0.3 1,049,325 - yehQ MCAODC_21230 0.34 +0.9 1,049,371 + yehQ MCAODC_21230 0.36 -0.2 1,049,371 + yehQ MCAODC_21230 0.36 +0.2 1,049,372 - yehQ MCAODC_21230 0.36 -0.5 1,049,492 - yehQ MCAODC_21230 0.42 +1.2 1,049,510 + yehQ MCAODC_21230 0.43 +0.2 1,049,541 - yehQ MCAODC_21230 0.45 -0.3
Or see this region's nucleotide sequence