Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mdtB and mdtC are separated by 0 nucleotides mdtC and mdtD are separated by 0 nucleotides
MCAODC_20745: mdtB - multidrug efflux RND transporter permease subunit MdtB, at 958,586 to 961,708
mdtB
MCAODC_20750: mdtC - multidrug efflux RND transporter permease subunit MdtC, at 961,709 to 964,786
mdtC
MCAODC_20755: mdtD - Putative multidrug resistance protein MdtD, at 964,787 to 966,202
mdtD
Position (kb) 961
962
963
964
965 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 960.810 kb on - strand, within mdtB at 960.810 kb on - strand, within mdtB at 960.841 kb on + strand, within mdtB at 960.842 kb on - strand, within mdtB at 960.845 kb on + strand, within mdtB at 960.845 kb on + strand, within mdtB at 960.845 kb on + strand, within mdtB at 960.847 kb on + strand, within mdtB at 961.057 kb on + strand, within mdtB at 961.057 kb on + strand, within mdtB at 961.062 kb on - strand, within mdtB at 961.062 kb on - strand, within mdtB at 961.062 kb on - strand, within mdtB at 961.062 kb on - strand, within mdtB at 961.090 kb on + strand, within mdtB at 961.091 kb on - strand, within mdtB at 961.217 kb on + strand, within mdtB at 961.217 kb on + strand, within mdtB at 961.217 kb on + strand, within mdtB at 961.218 kb on - strand, within mdtB at 961.218 kb on - strand, within mdtB at 961.218 kb on - strand, within mdtB at 961.218 kb on - strand, within mdtB at 961.218 kb on - strand, within mdtB at 961.218 kb on - strand, within mdtB at 961.218 kb on - strand, within mdtB at 961.219 kb on + strand, within mdtB at 961.250 kb on - strand, within mdtB at 961.357 kb on + strand, within mdtB at 961.357 kb on + strand, within mdtB at 961.358 kb on - strand, within mdtB at 961.560 kb on + strand at 961.560 kb on + strand at 961.560 kb on + strand at 961.561 kb on - strand at 961.573 kb on - strand at 961.640 kb on + strand at 961.706 kb on + strand at 961.706 kb on + strand at 961.707 kb on - strand at 961.734 kb on - strand at 961.771 kb on + strand at 961.772 kb on - strand at 961.785 kb on + strand at 961.798 kb on + strand at 961.979 kb on - strand at 961.981 kb on + strand at 961.982 kb on - strand at 962.125 kb on + strand, within mdtC at 962.125 kb on + strand, within mdtC at 962.126 kb on - strand, within mdtC at 962.126 kb on - strand, within mdtC at 962.126 kb on - strand, within mdtC at 962.153 kb on + strand, within mdtC at 962.154 kb on - strand, within mdtC at 962.172 kb on - strand, within mdtC at 962.320 kb on - strand, within mdtC at 962.451 kb on - strand, within mdtC at 962.554 kb on - strand, within mdtC at 962.584 kb on + strand, within mdtC at 962.585 kb on - strand, within mdtC at 962.599 kb on - strand, within mdtC at 962.619 kb on + strand, within mdtC at 962.725 kb on + strand, within mdtC at 962.725 kb on + strand, within mdtC at 962.726 kb on - strand, within mdtC at 962.785 kb on + strand, within mdtC at 962.786 kb on - strand, within mdtC at 962.788 kb on + strand, within mdtC at 962.789 kb on - strand, within mdtC at 962.824 kb on + strand, within mdtC at 962.825 kb on - strand, within mdtC at 962.840 kb on + strand, within mdtC at 962.840 kb on + strand, within mdtC at 962.841 kb on - strand, within mdtC at 963.008 kb on - strand, within mdtC at 963.008 kb on - strand, within mdtC at 963.234 kb on + strand, within mdtC at 963.256 kb on + strand, within mdtC at 963.256 kb on + strand, within mdtC at 963.257 kb on - strand, within mdtC at 963.337 kb on - strand, within mdtC at 963.337 kb on - strand, within mdtC at 963.338 kb on + strand, within mdtC at 963.338 kb on + strand, within mdtC at 963.338 kb on + strand, within mdtC at 963.338 kb on + strand, within mdtC at 963.339 kb on - strand, within mdtC at 963.339 kb on - strand, within mdtC at 963.339 kb on - strand, within mdtC at 963.340 kb on + strand, within mdtC at 963.340 kb on + strand, within mdtC at 963.340 kb on + strand, within mdtC at 963.341 kb on - strand, within mdtC at 963.415 kb on + strand, within mdtC at 963.539 kb on - strand, within mdtC at 963.586 kb on + strand, within mdtC at 963.587 kb on - strand, within mdtC at 963.597 kb on + strand, within mdtC at 963.690 kb on - strand, within mdtC at 963.696 kb on - strand, within mdtC at 963.696 kb on - strand, within mdtC at 963.867 kb on + strand, within mdtC at 963.867 kb on + strand, within mdtC at 963.868 kb on - strand, within mdtC at 963.888 kb on + strand, within mdtC at 963.892 kb on + strand, within mdtC at 963.945 kb on - strand, within mdtC at 963.946 kb on + strand, within mdtC at 963.946 kb on + strand, within mdtC at 963.947 kb on - strand, within mdtC at 964.298 kb on + strand, within mdtC at 964.298 kb on + strand, within mdtC at 964.299 kb on - strand, within mdtC at 964.299 kb on - strand, within mdtC at 964.299 kb on - strand, within mdtC at 964.299 kb on - strand, within mdtC at 964.299 kb on - strand, within mdtC at 964.299 kb on - strand, within mdtC at 964.299 kb on - strand, within mdtC at 964.299 kb on - strand, within mdtC at 964.299 kb on - strand, within mdtC at 964.300 kb on + strand, within mdtC at 964.328 kb on + strand, within mdtC at 964.329 kb on - strand, within mdtC at 964.332 kb on + strand, within mdtC at 964.332 kb on + strand, within mdtC at 964.332 kb on + strand, within mdtC at 964.333 kb on - strand, within mdtC at 964.333 kb on - strand, within mdtC at 964.333 kb on - strand, within mdtC at 964.419 kb on + strand, within mdtC at 964.444 kb on - strand, within mdtC at 964.446 kb on + strand, within mdtC at 964.474 kb on + strand, within mdtC at 964.475 kb on - strand, within mdtC at 964.475 kb on - strand, within mdtC at 964.475 kb on - strand, within mdtC at 964.535 kb on - strand at 964.535 kb on - strand at 964.571 kb on - strand at 964.579 kb on + strand at 964.703 kb on + strand at 964.704 kb on - strand at 964.704 kb on - strand at 964.706 kb on - strand at 964.719 kb on + strand at 964.719 kb on + strand at 964.719 kb on + strand at 964.719 kb on + strand at 964.719 kb on + strand at 964.720 kb on - strand at 964.720 kb on - strand at 964.720 kb on - strand at 964.722 kb on - strand at 964.722 kb on - strand at 964.847 kb on - strand at 964.873 kb on - strand at 964.924 kb on + strand at 964.924 kb on + strand at 964.924 kb on + strand at 964.925 kb on - strand at 964.925 kb on - strand at 964.946 kb on + strand, within mdtD at 964.946 kb on + strand, within mdtD at 964.946 kb on + strand, within mdtD at 964.947 kb on - strand, within mdtD at 964.947 kb on - strand, within mdtD at 965.014 kb on + strand, within mdtD at 965.180 kb on + strand, within mdtD at 965.180 kb on + strand, within mdtD at 965.180 kb on + strand, within mdtD at 965.180 kb on + strand, within mdtD at 965.180 kb on + strand, within mdtD at 965.180 kb on + strand, within mdtD at 965.181 kb on - strand, within mdtD at 965.181 kb on - strand, within mdtD at 965.182 kb on + strand, within mdtD at 965.182 kb on + strand, within mdtD at 965.183 kb on - strand, within mdtD at 965.349 kb on - strand, within mdtD at 965.388 kb on + strand, within mdtD at 965.413 kb on - strand, within mdtD at 965.508 kb on - strand, within mdtD at 965.508 kb on - strand, within mdtD at 965.633 kb on - strand, within mdtD at 965.739 kb on + strand, within mdtD at 965.739 kb on + strand, within mdtD at 965.740 kb on - strand, within mdtD
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 960,810 - mdtB MCAODC_20745 0.71 +0.2 960,810 - mdtB MCAODC_20745 0.71 -3.0 960,841 + mdtB MCAODC_20745 0.72 +0.0 960,842 - mdtB MCAODC_20745 0.72 -0.2 960,845 + mdtB MCAODC_20745 0.72 -1.0 960,845 + mdtB MCAODC_20745 0.72 +0.7 960,845 + mdtB MCAODC_20745 0.72 +0.3 960,847 + mdtB MCAODC_20745 0.72 +3.1 961,057 + mdtB MCAODC_20745 0.79 +0.9 961,057 + mdtB MCAODC_20745 0.79 -2.2 961,062 - mdtB MCAODC_20745 0.79 +1.2 961,062 - mdtB MCAODC_20745 0.79 +2.0 961,062 - mdtB MCAODC_20745 0.79 +1.7 961,062 - mdtB MCAODC_20745 0.79 +0.9 961,090 + mdtB MCAODC_20745 0.80 -0.8 961,091 - mdtB MCAODC_20745 0.80 -0.5 961,217 + mdtB MCAODC_20745 0.84 +0.1 961,217 + mdtB MCAODC_20745 0.84 -0.3 961,217 + mdtB MCAODC_20745 0.84 +0.6 961,218 - mdtB MCAODC_20745 0.84 -1.1 961,218 - mdtB MCAODC_20745 0.84 -3.3 961,218 - mdtB MCAODC_20745 0.84 -1.6 961,218 - mdtB MCAODC_20745 0.84 +0.9 961,218 - mdtB MCAODC_20745 0.84 -3.6 961,218 - mdtB MCAODC_20745 0.84 +0.4 961,218 - mdtB MCAODC_20745 0.84 -0.8 961,219 + mdtB MCAODC_20745 0.84 +0.5 961,250 - mdtB MCAODC_20745 0.85 -0.1 961,357 + mdtB MCAODC_20745 0.89 -0.1 961,357 + mdtB MCAODC_20745 0.89 -0.4 961,358 - mdtB MCAODC_20745 0.89 -1.5 961,560 + +0.6 961,560 + +2.1 961,560 + +1.7 961,561 - -0.7 961,573 - +0.8 961,640 + +0.1 961,706 + -0.5 961,706 + -0.2 961,707 - -2.7 961,734 - -0.6 961,771 + -0.2 961,772 - -0.1 961,785 + +0.7 961,798 + +0.6 961,979 - -0.2 961,981 + -0.7 961,982 - +0.3 962,125 + mdtC MCAODC_20750 0.14 +0.1 962,125 + mdtC MCAODC_20750 0.14 -2.9 962,126 - mdtC MCAODC_20750 0.14 -0.8 962,126 - mdtC MCAODC_20750 0.14 +0.2 962,126 - mdtC MCAODC_20750 0.14 +2.0 962,153 + mdtC MCAODC_20750 0.14 +0.5 962,154 - mdtC MCAODC_20750 0.14 +0.7 962,172 - mdtC MCAODC_20750 0.15 +2.1 962,320 - mdtC MCAODC_20750 0.20 -0.9 962,451 - mdtC MCAODC_20750 0.24 -0.9 962,554 - mdtC MCAODC_20750 0.27 -2.3 962,584 + mdtC MCAODC_20750 0.28 -1.8 962,585 - mdtC MCAODC_20750 0.28 -1.1 962,599 - mdtC MCAODC_20750 0.29 +0.1 962,619 + mdtC MCAODC_20750 0.30 +0.8 962,725 + mdtC MCAODC_20750 0.33 -0.7 962,725 + mdtC MCAODC_20750 0.33 -0.1 962,726 - mdtC MCAODC_20750 0.33 -1.8 962,785 + mdtC MCAODC_20750 0.35 -2.5 962,786 - mdtC MCAODC_20750 0.35 -3.2 962,788 + mdtC MCAODC_20750 0.35 -0.6 962,789 - mdtC MCAODC_20750 0.35 -0.6 962,824 + mdtC MCAODC_20750 0.36 +0.7 962,825 - mdtC MCAODC_20750 0.36 -3.9 962,840 + mdtC MCAODC_20750 0.37 -0.6 962,840 + mdtC MCAODC_20750 0.37 +0.6 962,841 - mdtC MCAODC_20750 0.37 +1.1 963,008 - mdtC MCAODC_20750 0.42 -3.1 963,008 - mdtC MCAODC_20750 0.42 +0.5 963,234 + mdtC MCAODC_20750 0.50 -0.3 963,256 + mdtC MCAODC_20750 0.50 -0.1 963,256 + mdtC MCAODC_20750 0.50 -3.3 963,257 - mdtC MCAODC_20750 0.50 -1.3 963,337 - mdtC MCAODC_20750 0.53 -1.5 963,337 - mdtC MCAODC_20750 0.53 +1.1 963,338 + mdtC MCAODC_20750 0.53 +1.5 963,338 + mdtC MCAODC_20750 0.53 -0.6 963,338 + mdtC MCAODC_20750 0.53 +1.8 963,338 + mdtC MCAODC_20750 0.53 -0.4 963,339 - mdtC MCAODC_20750 0.53 -0.9 963,339 - mdtC MCAODC_20750 0.53 -2.5 963,339 - mdtC MCAODC_20750 0.53 +0.3 963,340 + mdtC MCAODC_20750 0.53 +1.3 963,340 + mdtC MCAODC_20750 0.53 +1.8 963,340 + mdtC MCAODC_20750 0.53 -0.6 963,341 - mdtC MCAODC_20750 0.53 -2.7 963,415 + mdtC MCAODC_20750 0.55 +0.5 963,539 - mdtC MCAODC_20750 0.59 +1.4 963,586 + mdtC MCAODC_20750 0.61 +0.3 963,587 - mdtC MCAODC_20750 0.61 +1.4 963,597 + mdtC MCAODC_20750 0.61 +0.3 963,690 - mdtC MCAODC_20750 0.64 +0.6 963,696 - mdtC MCAODC_20750 0.65 -1.3 963,696 - mdtC MCAODC_20750 0.65 +0.1 963,867 + mdtC MCAODC_20750 0.70 +1.3 963,867 + mdtC MCAODC_20750 0.70 +1.6 963,868 - mdtC MCAODC_20750 0.70 +1.0 963,888 + mdtC MCAODC_20750 0.71 -2.9 963,892 + mdtC MCAODC_20750 0.71 +1.5 963,945 - mdtC MCAODC_20750 0.73 -1.0 963,946 + mdtC MCAODC_20750 0.73 +0.3 963,946 + mdtC MCAODC_20750 0.73 -0.8 963,947 - mdtC MCAODC_20750 0.73 -0.5 964,298 + mdtC MCAODC_20750 0.84 +0.2 964,298 + mdtC MCAODC_20750 0.84 -1.4 964,299 - mdtC MCAODC_20750 0.84 -0.2 964,299 - mdtC MCAODC_20750 0.84 -2.5 964,299 - mdtC MCAODC_20750 0.84 -0.4 964,299 - mdtC MCAODC_20750 0.84 +0.4 964,299 - mdtC MCAODC_20750 0.84 -0.4 964,299 - mdtC MCAODC_20750 0.84 -1.2 964,299 - mdtC MCAODC_20750 0.84 +0.8 964,299 - mdtC MCAODC_20750 0.84 +1.7 964,299 - mdtC MCAODC_20750 0.84 +0.2 964,300 + mdtC MCAODC_20750 0.84 +0.3 964,328 + mdtC MCAODC_20750 0.85 +0.1 964,329 - mdtC MCAODC_20750 0.85 -1.7 964,332 + mdtC MCAODC_20750 0.85 +0.6 964,332 + mdtC MCAODC_20750 0.85 -0.6 964,332 + mdtC MCAODC_20750 0.85 -0.5 964,333 - mdtC MCAODC_20750 0.85 -0.3 964,333 - mdtC MCAODC_20750 0.85 +1.1 964,333 - mdtC MCAODC_20750 0.85 -2.9 964,419 + mdtC MCAODC_20750 0.88 -0.0 964,444 - mdtC MCAODC_20750 0.89 -1.3 964,446 + mdtC MCAODC_20750 0.89 -0.4 964,474 + mdtC MCAODC_20750 0.90 -0.6 964,475 - mdtC MCAODC_20750 0.90 -2.6 964,475 - mdtC MCAODC_20750 0.90 +1.3 964,475 - mdtC MCAODC_20750 0.90 +0.5 964,535 - +1.3 964,535 - -0.8 964,571 - -3.6 964,579 + -0.4 964,703 + +1.4 964,704 - +0.7 964,704 - -3.3 964,706 - +0.9 964,719 + +2.1 964,719 + +0.3 964,719 + -2.3 964,719 + -0.6 964,719 + -2.8 964,720 - -0.6 964,720 - +0.1 964,720 - +1.8 964,722 - -0.9 964,722 - +1.1 964,847 - +1.1 964,873 - +2.6 964,924 + -2.7 964,924 + +0.9 964,924 + -0.7 964,925 - +0.7 964,925 - +1.2 964,946 + mdtD MCAODC_20755 0.11 -2.1 964,946 + mdtD MCAODC_20755 0.11 +2.2 964,946 + mdtD MCAODC_20755 0.11 +1.1 964,947 - mdtD MCAODC_20755 0.11 +0.6 964,947 - mdtD MCAODC_20755 0.11 +0.8 965,014 + mdtD MCAODC_20755 0.16 +1.5 965,180 + mdtD MCAODC_20755 0.28 -2.7 965,180 + mdtD MCAODC_20755 0.28 -2.9 965,180 + mdtD MCAODC_20755 0.28 +0.7 965,180 + mdtD MCAODC_20755 0.28 -0.3 965,180 + mdtD MCAODC_20755 0.28 -3.4 965,180 + mdtD MCAODC_20755 0.28 -1.1 965,181 - mdtD MCAODC_20755 0.28 +0.9 965,181 - mdtD MCAODC_20755 0.28 -0.6 965,182 + mdtD MCAODC_20755 0.28 +0.5 965,182 + mdtD MCAODC_20755 0.28 -2.1 965,183 - mdtD MCAODC_20755 0.28 +0.2 965,349 - mdtD MCAODC_20755 0.40 +1.3 965,388 + mdtD MCAODC_20755 0.42 +0.5 965,413 - mdtD MCAODC_20755 0.44 -0.4 965,508 - mdtD MCAODC_20755 0.51 +1.6 965,508 - mdtD MCAODC_20755 0.51 -0.6 965,633 - mdtD MCAODC_20755 0.60 +1.0 965,739 + mdtD MCAODC_20755 0.67 -0.7 965,739 + mdtD MCAODC_20755 0.67 +0.3 965,740 - mdtD MCAODC_20755 0.67 +1.2
Or see this region's nucleotide sequence