Strain Fitness in Escherichia coli ECRC101 around MCAODC_19825

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthchA and hprS are separated by 107 nucleotideshprS and hprR overlap by 1 nucleotideshprR and hiuH are separated by 21 nucleotides MCAODC_19820: hchA - protein deglycase HchA, at 789,583 to 790,434 hchA MCAODC_19825: hprS - two-component system sensor histidine kinase HprS, at 790,542 to 791,900 hprS MCAODC_19830: hprR - response regulator transcription factor HprR, at 791,900 to 792,682 hprR MCAODC_19835: hiuH - hydroxyisourate hydrolase, at 792,704 to 793,117 hiuH Position (kb) 790 791 792Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 789.544 kb on + strandat 789.560 kb on + strandat 789.670 kb on - strand, within hchAat 789.830 kb on - strand, within hchAat 789.830 kb on - strand, within hchAat 789.898 kb on + strand, within hchAat 789.898 kb on + strand, within hchAat 789.906 kb on + strand, within hchAat 789.952 kb on - strand, within hchAat 790.056 kb on + strand, within hchAat 790.064 kb on + strand, within hchAat 790.082 kb on + strand, within hchAat 790.082 kb on + strand, within hchAat 790.083 kb on - strand, within hchAat 790.083 kb on - strand, within hchAat 790.193 kb on - strand, within hchAat 790.248 kb on + strand, within hchAat 790.248 kb on + strand, within hchAat 790.270 kb on + strand, within hchAat 790.271 kb on - strand, within hchAat 790.334 kb on + strand, within hchAat 790.334 kb on + strand, within hchAat 790.334 kb on + strand, within hchAat 790.338 kb on + strand, within hchAat 790.338 kb on + strand, within hchAat 790.339 kb on - strand, within hchAat 790.442 kb on + strandat 790.442 kb on + strandat 790.455 kb on - strandat 790.484 kb on + strandat 790.578 kb on - strandat 790.597 kb on + strandat 790.597 kb on + strandat 790.598 kb on - strandat 790.602 kb on - strandat 790.602 kb on - strandat 790.680 kb on - strand, within hprSat 790.755 kb on - strand, within hprSat 791.159 kb on + strand, within hprSat 791.393 kb on + strand, within hprSat 791.413 kb on - strand, within hprSat 791.511 kb on - strand, within hprSat 791.890 kb on - strandat 792.026 kb on - strand, within hprRat 792.416 kb on - strand, within hprRat 792.416 kb on - strand, within hprRat 792.556 kb on + strand, within hprRat 792.557 kb on - strand, within hprRat 792.587 kb on + strand, within hprRat 792.595 kb on - strand, within hprRat 792.768 kb on - strand, within hiuHat 792.768 kb on - strand, within hiuHat 792.883 kb on + strand, within hiuHat 792.884 kb on - strand, within hiuH

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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789,544 + -0.3
789,560 + -0.3
789,670 - hchA MCAODC_19820 0.10 -1.2
789,830 - hchA MCAODC_19820 0.29 -0.0
789,830 - hchA MCAODC_19820 0.29 -0.6
789,898 + hchA MCAODC_19820 0.37 -1.2
789,898 + hchA MCAODC_19820 0.37 -0.6
789,906 + hchA MCAODC_19820 0.38 +0.4
789,952 - hchA MCAODC_19820 0.43 +0.2
790,056 + hchA MCAODC_19820 0.56 +1.0
790,064 + hchA MCAODC_19820 0.56 +1.0
790,082 + hchA MCAODC_19820 0.59 -0.8
790,082 + hchA MCAODC_19820 0.59 +0.4
790,083 - hchA MCAODC_19820 0.59 +0.3
790,083 - hchA MCAODC_19820 0.59 -1.5
790,193 - hchA MCAODC_19820 0.72 +1.9
790,248 + hchA MCAODC_19820 0.78 -2.3
790,248 + hchA MCAODC_19820 0.78 -3.6
790,270 + hchA MCAODC_19820 0.81 +1.0
790,271 - hchA MCAODC_19820 0.81 -1.5
790,334 + hchA MCAODC_19820 0.88 +0.8
790,334 + hchA MCAODC_19820 0.88 +0.4
790,334 + hchA MCAODC_19820 0.88 +0.6
790,338 + hchA MCAODC_19820 0.89 -2.2
790,338 + hchA MCAODC_19820 0.89 +0.2
790,339 - hchA MCAODC_19820 0.89 +1.3
790,442 + -2.6
790,442 + -1.1
790,455 - -0.8
790,484 + -1.3
790,578 - +1.2
790,597 + +0.5
790,597 + +1.7
790,598 - -1.2
790,602 - +0.7
790,602 - -0.8
790,680 - hprS MCAODC_19825 0.10 -2.2
790,755 - hprS MCAODC_19825 0.16 +1.0
791,159 + hprS MCAODC_19825 0.45 -2.7
791,393 + hprS MCAODC_19825 0.63 +0.9
791,413 - hprS MCAODC_19825 0.64 +0.4
791,511 - hprS MCAODC_19825 0.71 +1.0
791,890 - -1.7
792,026 - hprR MCAODC_19830 0.16 +0.9
792,416 - hprR MCAODC_19830 0.66 +0.1
792,416 - hprR MCAODC_19830 0.66 -1.9
792,556 + hprR MCAODC_19830 0.84 -1.3
792,557 - hprR MCAODC_19830 0.84 -2.1
792,587 + hprR MCAODC_19830 0.88 -2.0
792,595 - hprR MCAODC_19830 0.89 -1.1
792,768 - hiuH MCAODC_19835 0.15 -2.1
792,768 - hiuH MCAODC_19835 0.15 -0.8
792,883 + hiuH MCAODC_19835 0.43 -1.4
792,884 - hiuH MCAODC_19835 0.43 -0.2

Or see this region's nucleotide sequence