Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yedI and yedA are separated by 172 nucleotides yedA and vsr overlap by 12 nucleotides vsr and dcm overlap by 20 nucleotides
MCAODC_19780: yedI - Inner membrane protein YedI, at 782,204 to 783,121
yedI
MCAODC_19785: yedA - drug/metabolite exporter YedA, at 783,294 to 784,214
yedA
MCAODC_19790: vsr - VSPR family DNA mismatch endonuclease, at 784,203 to 784,673
vsr
MCAODC_19795: dcm - DNA-cytosine methyltransferase, at 784,654 to 786,072
dcm
Position (kb) 783
784
785 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 782.301 kb on - strand, within yedI at 782.301 kb on - strand, within yedI at 782.304 kb on - strand, within yedI at 782.369 kb on - strand, within yedI at 782.375 kb on + strand, within yedI at 782.376 kb on - strand, within yedI at 782.468 kb on - strand, within yedI at 782.471 kb on + strand, within yedI at 782.472 kb on - strand, within yedI at 782.531 kb on - strand, within yedI at 782.531 kb on - strand, within yedI at 782.544 kb on - strand, within yedI at 782.554 kb on - strand, within yedI at 782.666 kb on - strand, within yedI at 782.666 kb on - strand, within yedI at 782.666 kb on - strand, within yedI at 782.690 kb on + strand, within yedI at 782.770 kb on + strand, within yedI at 782.770 kb on + strand, within yedI at 782.771 kb on - strand, within yedI at 782.791 kb on + strand, within yedI at 782.792 kb on - strand, within yedI at 782.792 kb on - strand, within yedI at 782.808 kb on - strand, within yedI at 782.912 kb on - strand, within yedI at 782.915 kb on - strand, within yedI at 782.999 kb on + strand, within yedI at 782.999 kb on + strand, within yedI at 783.000 kb on - strand, within yedI at 783.011 kb on + strand, within yedI at 783.014 kb on + strand, within yedI at 783.015 kb on - strand, within yedI at 783.150 kb on + strand at 783.151 kb on - strand at 783.154 kb on + strand at 783.154 kb on + strand at 783.179 kb on + strand at 783.223 kb on + strand at 783.224 kb on - strand at 783.224 kb on - strand at 783.224 kb on - strand at 783.256 kb on + strand at 783.259 kb on + strand at 783.259 kb on + strand at 783.259 kb on + strand at 783.342 kb on + strand at 783.342 kb on + strand at 783.342 kb on + strand at 783.342 kb on + strand at 783.342 kb on + strand at 783.343 kb on - strand at 783.343 kb on - strand at 783.345 kb on - strand at 783.460 kb on + strand, within yedA at 783.621 kb on - strand, within yedA at 783.774 kb on - strand, within yedA at 783.809 kb on + strand, within yedA at 783.810 kb on - strand, within yedA at 783.810 kb on - strand, within yedA at 783.814 kb on + strand, within yedA at 783.815 kb on - strand, within yedA at 783.821 kb on - strand, within yedA at 783.981 kb on + strand, within yedA at 783.981 kb on + strand, within yedA at 783.981 kb on + strand, within yedA at 783.981 kb on + strand, within yedA at 783.981 kb on + strand, within yedA at 783.982 kb on - strand, within yedA at 783.982 kb on - strand, within yedA at 783.983 kb on + strand, within yedA at 783.983 kb on + strand, within yedA at 783.983 kb on + strand, within yedA at 783.984 kb on - strand, within yedA at 783.987 kb on + strand, within yedA at 783.987 kb on + strand, within yedA at 783.987 kb on + strand, within yedA at 783.987 kb on + strand, within yedA at 783.991 kb on + strand, within yedA at 784.026 kb on + strand, within yedA at 784.026 kb on + strand, within yedA at 784.032 kb on + strand, within yedA at 784.032 kb on + strand, within yedA at 784.033 kb on - strand, within yedA at 784.212 kb on + strand at 784.218 kb on + strand at 784.400 kb on + strand, within vsr at 784.453 kb on + strand, within vsr at 784.454 kb on - strand, within vsr at 784.488 kb on - strand, within vsr at 784.492 kb on - strand, within vsr at 784.844 kb on - strand, within dcm at 784.971 kb on - strand, within dcm at 784.990 kb on - strand, within dcm at 785.081 kb on + strand, within dcm at 785.108 kb on + strand, within dcm at 785.208 kb on + strand, within dcm
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 782,301 - yedI MCAODC_19780 0.11 -1.8 782,301 - yedI MCAODC_19780 0.11 +1.4 782,304 - yedI MCAODC_19780 0.11 -2.4 782,369 - yedI MCAODC_19780 0.18 +0.7 782,375 + yedI MCAODC_19780 0.19 -3.5 782,376 - yedI MCAODC_19780 0.19 +0.0 782,468 - yedI MCAODC_19780 0.29 +0.4 782,471 + yedI MCAODC_19780 0.29 -1.2 782,472 - yedI MCAODC_19780 0.29 +1.2 782,531 - yedI MCAODC_19780 0.36 -0.7 782,531 - yedI MCAODC_19780 0.36 -0.0 782,544 - yedI MCAODC_19780 0.37 -0.6 782,554 - yedI MCAODC_19780 0.38 -0.0 782,666 - yedI MCAODC_19780 0.50 +0.4 782,666 - yedI MCAODC_19780 0.50 +1.7 782,666 - yedI MCAODC_19780 0.50 -1.5 782,690 + yedI MCAODC_19780 0.53 -0.1 782,770 + yedI MCAODC_19780 0.62 -0.3 782,770 + yedI MCAODC_19780 0.62 +0.0 782,771 - yedI MCAODC_19780 0.62 -0.5 782,791 + yedI MCAODC_19780 0.64 +1.2 782,792 - yedI MCAODC_19780 0.64 +0.6 782,792 - yedI MCAODC_19780 0.64 -1.2 782,808 - yedI MCAODC_19780 0.66 +0.8 782,912 - yedI MCAODC_19780 0.77 -3.1 782,915 - yedI MCAODC_19780 0.77 -0.4 782,999 + yedI MCAODC_19780 0.87 +1.3 782,999 + yedI MCAODC_19780 0.87 +1.4 783,000 - yedI MCAODC_19780 0.87 -0.5 783,011 + yedI MCAODC_19780 0.88 +0.2 783,014 + yedI MCAODC_19780 0.88 +0.2 783,015 - yedI MCAODC_19780 0.88 -1.2 783,150 + -2.7 783,151 - -0.5 783,154 + -0.2 783,154 + -0.7 783,179 + -1.0 783,223 + +0.1 783,224 - -1.5 783,224 - -3.5 783,224 - -1.3 783,256 + +0.7 783,259 + +3.2 783,259 + -1.9 783,259 + -1.4 783,342 + -3.0 783,342 + +0.3 783,342 + +1.0 783,342 + -0.5 783,342 + -2.7 783,343 - -0.5 783,343 - -0.8 783,345 - -1.8 783,460 + yedA MCAODC_19785 0.18 +0.5 783,621 - yedA MCAODC_19785 0.36 -0.3 783,774 - yedA MCAODC_19785 0.52 -1.1 783,809 + yedA MCAODC_19785 0.56 +0.2 783,810 - yedA MCAODC_19785 0.56 -1.0 783,810 - yedA MCAODC_19785 0.56 +1.8 783,814 + yedA MCAODC_19785 0.56 +1.2 783,815 - yedA MCAODC_19785 0.57 +0.3 783,821 - yedA MCAODC_19785 0.57 -3.5 783,981 + yedA MCAODC_19785 0.75 -2.8 783,981 + yedA MCAODC_19785 0.75 -1.0 783,981 + yedA MCAODC_19785 0.75 -0.2 783,981 + yedA MCAODC_19785 0.75 -1.5 783,981 + yedA MCAODC_19785 0.75 +1.9 783,982 - yedA MCAODC_19785 0.75 +3.2 783,982 - yedA MCAODC_19785 0.75 +0.7 783,983 + yedA MCAODC_19785 0.75 -0.6 783,983 + yedA MCAODC_19785 0.75 -1.1 783,983 + yedA MCAODC_19785 0.75 +2.1 783,984 - yedA MCAODC_19785 0.75 +0.0 783,987 + yedA MCAODC_19785 0.75 -1.1 783,987 + yedA MCAODC_19785 0.75 +0.0 783,987 + yedA MCAODC_19785 0.75 +0.0 783,987 + yedA MCAODC_19785 0.75 +0.5 783,991 + yedA MCAODC_19785 0.76 +0.3 784,026 + yedA MCAODC_19785 0.79 -0.8 784,026 + yedA MCAODC_19785 0.79 +0.1 784,032 + yedA MCAODC_19785 0.80 +1.3 784,032 + yedA MCAODC_19785 0.80 -0.4 784,033 - yedA MCAODC_19785 0.80 +1.7 784,212 + -0.6 784,218 + -0.6 784,400 + vsr MCAODC_19790 0.42 +1.8 784,453 + vsr MCAODC_19790 0.53 -0.3 784,454 - vsr MCAODC_19790 0.53 +0.8 784,488 - vsr MCAODC_19790 0.61 +0.8 784,492 - vsr MCAODC_19790 0.61 -0.9 784,844 - dcm MCAODC_19795 0.13 -2.8 784,971 - dcm MCAODC_19795 0.22 +0.2 784,990 - dcm MCAODC_19795 0.24 +0.0 785,081 + dcm MCAODC_19795 0.30 -1.5 785,108 + dcm MCAODC_19795 0.32 +1.3 785,208 + dcm MCAODC_19795 0.39 -1.7
Or see this region's nucleotide sequence