Strain Fitness in Escherichia coli ECRC101 around MCAODC_19675

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntespR4 and fliE are separated by 348 nucleotidesfliE and fliF are separated by 214 nucleotides MCAODC_19670: espR4 - T3SS effector leucine-rich repeat protein EspR4, at 764,967 to 766,106 espR4 MCAODC_19675: fliE - flagellar hook-basal body complex protein FliE, at 766,455 to 766,769 fliE MCAODC_19680: fliF - flagellar M-ring protein FliF, at 766,984 to 768,642 fliF Position (kb) 766 767Strain fitness (log2 ratio) -2 -1 0 1 2at 765.562 kb on - strand, within espR4at 765.666 kb on - strand, within espR4at 766.327 kb on + strandat 766.328 kb on - strandat 766.330 kb on - strandat 766.437 kb on - strandat 766.437 kb on - strandat 766.456 kb on + strandat 766.456 kb on + strandat 766.457 kb on - strandat 766.457 kb on - strandat 766.457 kb on - strandat 766.457 kb on - strandat 766.474 kb on - strandat 766.474 kb on - strandat 766.500 kb on - strand, within fliEat 766.628 kb on + strand, within fliEat 766.674 kb on - strand, within fliEat 766.674 kb on - strand, within fliEat 766.805 kb on - strandat 766.867 kb on - strandat 766.888 kb on + strandat 767.229 kb on + strand, within fliFat 767.247 kb on + strand, within fliFat 767.439 kb on - strand, within fliFat 767.665 kb on - strand, within fliFat 767.739 kb on + strand, within fliFat 767.740 kb on - strand, within fliFat 767.757 kb on + strand, within fliFat 767.757 kb on + strand, within fliFat 767.758 kb on - strand, within fliF

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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765,562 - espR4 MCAODC_19670 0.52 -0.1
765,666 - espR4 MCAODC_19670 0.61 -0.8
766,327 + +0.5
766,328 - -0.3
766,330 - -0.0
766,437 - -1.8
766,437 - -0.2
766,456 + -1.7
766,456 + +0.8
766,457 - +2.3
766,457 - +1.2
766,457 - +0.8
766,457 - -0.1
766,474 - -0.8
766,474 - +1.9
766,500 - fliE MCAODC_19675 0.14 +1.0
766,628 + fliE MCAODC_19675 0.55 -2.5
766,674 - fliE MCAODC_19675 0.70 +0.9
766,674 - fliE MCAODC_19675 0.70 -0.6
766,805 - -0.3
766,867 - -1.8
766,888 + +1.2
767,229 + fliF MCAODC_19680 0.15 -0.2
767,247 + fliF MCAODC_19680 0.16 +1.7
767,439 - fliF MCAODC_19680 0.27 +2.4
767,665 - fliF MCAODC_19680 0.41 -1.5
767,739 + fliF MCAODC_19680 0.46 +0.6
767,740 - fliF MCAODC_19680 0.46 +0.7
767,757 + fliF MCAODC_19680 0.47 -0.0
767,757 + fliF MCAODC_19680 0.47 +0.8
767,758 - fliF MCAODC_19680 0.47 +0.4

Or see this region's nucleotide sequence