Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yecE and yecN are separated by 52 nucleotides yecN and cmoA are separated by 40 nucleotides cmoA and cmoB overlap by 4 nucleotides
MCAODC_19170: yecE - UPF0759 protein YecE, at 682,592 to 683,410
yecE
MCAODC_19175: yecN - Inner membrane protein YecN, at 683,463 to 683,858
yecN
MCAODC_19180: cmoA - carboxy-S-adenosyl-L-methionine synthase CmoA, at 683,899 to 684,642
cmoA
MCAODC_19185: cmoB - tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB, at 684,639 to 685,610
cmoB
Position (kb) 683
684
685 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 682.967 kb on - strand, within yecE at 682.970 kb on + strand, within yecE at 682.971 kb on - strand, within yecE at 682.971 kb on - strand, within yecE at 682.971 kb on - strand, within yecE at 682.971 kb on - strand, within yecE at 683.029 kb on + strand, within yecE at 683.140 kb on + strand, within yecE at 683.160 kb on + strand, within yecE at 683.161 kb on - strand, within yecE at 683.206 kb on + strand, within yecE at 683.207 kb on - strand, within yecE at 683.207 kb on - strand, within yecE at 683.289 kb on + strand, within yecE at 683.290 kb on - strand, within yecE at 683.290 kb on - strand, within yecE at 683.293 kb on + strand, within yecE at 683.293 kb on + strand, within yecE at 683.294 kb on - strand, within yecE at 683.325 kb on + strand, within yecE at 683.325 kb on + strand, within yecE at 683.325 kb on + strand, within yecE at 683.326 kb on - strand, within yecE at 683.326 kb on - strand, within yecE at 683.329 kb on + strand at 683.329 kb on + strand at 683.330 kb on - strand at 683.330 kb on - strand at 683.330 kb on - strand at 683.330 kb on - strand at 683.330 kb on - strand at 683.330 kb on - strand at 683.330 kb on - strand at 683.330 kb on - strand at 683.347 kb on - strand at 683.351 kb on - strand at 683.351 kb on - strand at 683.421 kb on + strand at 683.421 kb on + strand at 683.421 kb on + strand at 683.468 kb on - strand at 683.478 kb on + strand at 683.478 kb on + strand at 683.478 kb on + strand at 683.479 kb on - strand at 683.556 kb on + strand, within yecN at 683.619 kb on + strand, within yecN at 683.620 kb on - strand, within yecN at 683.621 kb on + strand, within yecN at 683.622 kb on - strand, within yecN at 683.687 kb on + strand, within yecN at 683.687 kb on + strand, within yecN at 683.730 kb on + strand, within yecN at 683.730 kb on + strand, within yecN at 683.823 kb on + strand at 683.823 kb on + strand at 683.823 kb on + strand at 683.823 kb on + strand at 683.824 kb on - strand at 683.825 kb on + strand at 683.826 kb on - strand at 683.866 kb on + strand at 683.898 kb on + strand at 684.039 kb on + strand, within cmoA at 684.040 kb on - strand, within cmoA at 684.141 kb on + strand, within cmoA at 684.142 kb on - strand, within cmoA at 684.202 kb on - strand, within cmoA at 684.211 kb on + strand, within cmoA at 684.222 kb on + strand, within cmoA at 684.223 kb on - strand, within cmoA at 684.230 kb on + strand, within cmoA at 684.556 kb on - strand, within cmoA at 684.597 kb on + strand at 684.620 kb on + strand at 684.722 kb on + strand at 684.722 kb on + strand at 685.001 kb on - strand, within cmoB at 685.133 kb on + strand, within cmoB at 685.138 kb on + strand, within cmoB at 685.174 kb on + strand, within cmoB at 685.174 kb on + strand, within cmoB at 685.174 kb on + strand, within cmoB at 685.178 kb on + strand, within cmoB at 685.178 kb on + strand, within cmoB at 685.212 kb on - strand, within cmoB at 685.379 kb on + strand, within cmoB at 685.442 kb on - strand, within cmoB at 685.475 kb on + strand, within cmoB at 685.476 kb on - strand, within cmoB
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 682,967 - yecE MCAODC_19170 0.46 -0.4 682,970 + yecE MCAODC_19170 0.46 +1.3 682,971 - yecE MCAODC_19170 0.46 -1.4 682,971 - yecE MCAODC_19170 0.46 -0.0 682,971 - yecE MCAODC_19170 0.46 -0.2 682,971 - yecE MCAODC_19170 0.46 +0.4 683,029 + yecE MCAODC_19170 0.53 -1.9 683,140 + yecE MCAODC_19170 0.67 -0.2 683,160 + yecE MCAODC_19170 0.69 +1.1 683,161 - yecE MCAODC_19170 0.69 +0.0 683,206 + yecE MCAODC_19170 0.75 -1.4 683,207 - yecE MCAODC_19170 0.75 -1.6 683,207 - yecE MCAODC_19170 0.75 -1.3 683,289 + yecE MCAODC_19170 0.85 -2.8 683,290 - yecE MCAODC_19170 0.85 +1.7 683,290 - yecE MCAODC_19170 0.85 -1.4 683,293 + yecE MCAODC_19170 0.86 -0.9 683,293 + yecE MCAODC_19170 0.86 +0.2 683,294 - yecE MCAODC_19170 0.86 +1.0 683,325 + yecE MCAODC_19170 0.89 +0.0 683,325 + yecE MCAODC_19170 0.89 -1.0 683,325 + yecE MCAODC_19170 0.89 -0.2 683,326 - yecE MCAODC_19170 0.90 +2.5 683,326 - yecE MCAODC_19170 0.90 -0.5 683,329 + +3.0 683,329 + -2.8 683,330 - -0.5 683,330 - -0.7 683,330 - +1.0 683,330 - -0.1 683,330 - -0.1 683,330 - +0.1 683,330 - -0.1 683,330 - -0.0 683,347 - +0.8 683,351 - +1.1 683,351 - -0.5 683,421 + -2.4 683,421 + -0.7 683,421 + +0.5 683,468 - +0.4 683,478 + -0.1 683,478 + -0.3 683,478 + -0.2 683,479 - +1.0 683,556 + yecN MCAODC_19175 0.23 -2.0 683,619 + yecN MCAODC_19175 0.39 -1.1 683,620 - yecN MCAODC_19175 0.40 -2.0 683,621 + yecN MCAODC_19175 0.40 +0.4 683,622 - yecN MCAODC_19175 0.40 -2.1 683,687 + yecN MCAODC_19175 0.57 -1.1 683,687 + yecN MCAODC_19175 0.57 -0.2 683,730 + yecN MCAODC_19175 0.67 +0.3 683,730 + yecN MCAODC_19175 0.67 +0.1 683,823 + -2.9 683,823 + -3.0 683,823 + +0.7 683,823 + -2.3 683,824 - -0.6 683,825 + +1.2 683,826 - -2.3 683,866 + +0.6 683,898 + -1.6 684,039 + cmoA MCAODC_19180 0.19 -1.1 684,040 - cmoA MCAODC_19180 0.19 +3.1 684,141 + cmoA MCAODC_19180 0.33 -1.7 684,142 - cmoA MCAODC_19180 0.33 -0.4 684,202 - cmoA MCAODC_19180 0.41 +2.1 684,211 + cmoA MCAODC_19180 0.42 +1.4 684,222 + cmoA MCAODC_19180 0.43 -1.2 684,223 - cmoA MCAODC_19180 0.44 -1.4 684,230 + cmoA MCAODC_19180 0.44 -0.0 684,556 - cmoA MCAODC_19180 0.88 -2.8 684,597 + +0.5 684,620 + -0.4 684,722 + +0.4 684,722 + +0.7 685,001 - cmoB MCAODC_19185 0.37 +4.0 685,133 + cmoB MCAODC_19185 0.51 -0.4 685,138 + cmoB MCAODC_19185 0.51 +1.0 685,174 + cmoB MCAODC_19185 0.55 +0.6 685,174 + cmoB MCAODC_19185 0.55 +2.0 685,174 + cmoB MCAODC_19185 0.55 +0.8 685,178 + cmoB MCAODC_19185 0.55 +0.2 685,178 + cmoB MCAODC_19185 0.55 +0.4 685,212 - cmoB MCAODC_19185 0.59 +0.1 685,379 + cmoB MCAODC_19185 0.76 +0.3 685,442 - cmoB MCAODC_19185 0.83 +1.2 685,475 + cmoB MCAODC_19185 0.86 +2.7 685,476 - cmoB MCAODC_19185 0.86 +1.9
Or see this region's nucleotide sequence