Strain Fitness in Escherichia coli ECRC101 around MCAODC_19060

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpurT and kdgA are separated by 55 nucleotideskdgA and edd are separated by 36 nucleotides MCAODC_19055: purT - formate-dependent phosphoribosylglycinamide formyltransferase, at 661,979 to 663,157 purT MCAODC_19060: kdgA - bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase, at 663,213 to 663,854 kdgA MCAODC_19065: edd - phosphogluconate dehydratase, at 663,891 to 665,702 edd Position (kb) 663 664Strain fitness (log2 ratio) -3 -2 -1 0 1at 662.233 kb on + strand, within purTat 662.233 kb on + strand, within purTat 662.233 kb on + strand, within purTat 662.246 kb on - strand, within purTat 662.440 kb on - strand, within purTat 662.553 kb on + strand, within purTat 662.641 kb on - strand, within purTat 662.666 kb on + strand, within purTat 662.854 kb on - strand, within purTat 662.889 kb on + strand, within purTat 662.890 kb on - strand, within purTat 662.890 kb on - strand, within purTat 663.141 kb on + strandat 663.147 kb on + strandat 663.214 kb on + strandat 663.222 kb on - strandat 663.231 kb on + strandat 663.252 kb on - strandat 663.349 kb on + strand, within kdgAat 663.531 kb on - strand, within kdgAat 663.892 kb on + strandat 663.903 kb on - strandat 664.114 kb on + strand, within eddat 664.129 kb on - strand, within eddat 664.239 kb on - strand, within eddat 664.560 kb on - strand, within eddat 664.693 kb on + strand, within eddat 664.714 kb on - strand, within edd

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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662,233 + purT MCAODC_19055 0.22 +0.4
662,233 + purT MCAODC_19055 0.22 -2.4
662,233 + purT MCAODC_19055 0.22 +0.5
662,246 - purT MCAODC_19055 0.23 -0.4
662,440 - purT MCAODC_19055 0.39 +0.1
662,553 + purT MCAODC_19055 0.49 +0.1
662,641 - purT MCAODC_19055 0.56 -1.6
662,666 + purT MCAODC_19055 0.58 +1.6
662,854 - purT MCAODC_19055 0.74 +0.0
662,889 + purT MCAODC_19055 0.77 -0.6
662,890 - purT MCAODC_19055 0.77 -0.3
662,890 - purT MCAODC_19055 0.77 -1.0
663,141 + -2.3
663,147 + -0.8
663,214 + -1.2
663,222 - -0.1
663,231 + +0.1
663,252 - -0.9
663,349 + kdgA MCAODC_19060 0.21 -0.1
663,531 - kdgA MCAODC_19060 0.50 +0.1
663,892 + +0.8
663,903 - -2.8
664,114 + edd MCAODC_19065 0.12 -0.9
664,129 - edd MCAODC_19065 0.13 +0.7
664,239 - edd MCAODC_19065 0.19 +0.6
664,560 - edd MCAODC_19065 0.37 -0.7
664,693 + edd MCAODC_19065 0.44 -0.6
664,714 - edd MCAODC_19065 0.45 -2.2

Or see this region's nucleotide sequence