Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yobB and exoX are separated by 23 nucleotides exoX and ptrB overlap by 4 nucleotides ptrB and yebE are separated by 208 nucleotides yebE and MCAODC_19035 are separated by 59 nucleotides
MCAODC_19015: yobB - Uncharacterized protein YobB, at 656,538 to 657,194
yobB
MCAODC_19020: exoX - exodeoxyribonuclease X, at 657,218 to 657,880
exoX
MCAODC_19025: ptrB - oligopeptidase B, at 657,877 to 659,937
ptrB
MCAODC_19030: yebE - Inner membrane protein YebE, at 660,146 to 660,805
yebE
MCAODC_19035: MCAODC_19035 - hypothetical protein, at 660,865 to 660,975
_19035
Position (kb) 657
658
659
660 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 656.936 kb on + strand, within yobB at 656.937 kb on - strand, within yobB at 656.942 kb on + strand, within yobB at 657.134 kb on - strand at 657.177 kb on - strand at 657.187 kb on + strand at 657.187 kb on + strand at 657.229 kb on + strand at 657.428 kb on + strand, within exoX at 657.428 kb on + strand, within exoX at 657.429 kb on - strand, within exoX at 657.431 kb on + strand, within exoX at 657.446 kb on + strand, within exoX at 657.458 kb on - strand, within exoX at 657.551 kb on + strand, within exoX at 657.559 kb on + strand, within exoX at 657.569 kb on + strand, within exoX at 657.571 kb on + strand, within exoX at 657.571 kb on + strand, within exoX at 657.629 kb on + strand, within exoX at 657.629 kb on + strand, within exoX at 657.629 kb on + strand, within exoX at 657.638 kb on + strand, within exoX at 657.639 kb on - strand, within exoX at 657.639 kb on - strand, within exoX at 657.667 kb on + strand, within exoX at 657.753 kb on - strand, within exoX at 657.753 kb on - strand, within exoX at 657.797 kb on + strand, within exoX at 657.878 kb on + strand at 657.961 kb on - strand at 658.012 kb on + strand at 658.013 kb on - strand at 658.093 kb on + strand, within ptrB at 658.121 kb on + strand, within ptrB at 658.167 kb on - strand, within ptrB at 658.167 kb on - strand, within ptrB at 658.172 kb on + strand, within ptrB at 658.173 kb on - strand, within ptrB at 658.173 kb on - strand, within ptrB at 658.252 kb on + strand, within ptrB at 658.294 kb on + strand, within ptrB at 658.429 kb on - strand, within ptrB at 658.508 kb on + strand, within ptrB at 658.526 kb on - strand, within ptrB at 658.563 kb on + strand, within ptrB at 658.563 kb on + strand, within ptrB at 658.584 kb on - strand, within ptrB at 658.589 kb on + strand, within ptrB at 658.590 kb on - strand, within ptrB at 658.860 kb on - strand, within ptrB at 658.860 kb on - strand, within ptrB at 659.051 kb on + strand, within ptrB at 659.053 kb on + strand, within ptrB at 659.227 kb on + strand, within ptrB at 659.227 kb on + strand, within ptrB at 659.227 kb on + strand, within ptrB at 659.228 kb on - strand, within ptrB at 659.228 kb on - strand, within ptrB at 659.231 kb on + strand, within ptrB at 659.250 kb on + strand, within ptrB at 659.251 kb on - strand, within ptrB at 659.268 kb on - strand, within ptrB at 659.271 kb on + strand, within ptrB at 659.375 kb on + strand, within ptrB at 659.376 kb on - strand, within ptrB at 659.379 kb on - strand, within ptrB at 659.481 kb on - strand, within ptrB at 659.568 kb on + strand, within ptrB at 659.569 kb on - strand, within ptrB at 659.645 kb on + strand, within ptrB at 659.649 kb on + strand, within ptrB at 659.649 kb on + strand, within ptrB at 659.650 kb on - strand, within ptrB at 659.676 kb on + strand, within ptrB at 659.752 kb on + strand at 659.805 kb on + strand at 659.941 kb on - strand at 659.966 kb on + strand at 659.967 kb on - strand at 659.967 kb on - strand at 659.967 kb on - strand at 659.968 kb on + strand at 659.969 kb on - strand at 659.969 kb on - strand at 659.969 kb on - strand at 659.969 kb on - strand at 660.244 kb on - strand, within yebE at 660.269 kb on - strand, within yebE at 660.294 kb on + strand, within yebE at 660.451 kb on + strand, within yebE at 660.451 kb on + strand, within yebE at 660.521 kb on - strand, within yebE at 660.577 kb on - strand, within yebE at 660.577 kb on - strand, within yebE at 660.639 kb on + strand, within yebE at 660.668 kb on - strand, within yebE at 660.668 kb on - strand, within yebE at 660.806 kb on - strand at 660.806 kb on - strand at 660.806 kb on - strand at 660.806 kb on - strand at 660.806 kb on - strand at 660.838 kb on + strand at 660.839 kb on - strand at 660.868 kb on + strand at 660.869 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 656,936 + yobB MCAODC_19015 0.61 +1.5 656,937 - yobB MCAODC_19015 0.61 -0.7 656,942 + yobB MCAODC_19015 0.61 -1.1 657,134 - -0.7 657,177 - +0.2 657,187 + +0.4 657,187 + -0.2 657,229 + +0.7 657,428 + exoX MCAODC_19020 0.32 -0.2 657,428 + exoX MCAODC_19020 0.32 +0.6 657,429 - exoX MCAODC_19020 0.32 -1.9 657,431 + exoX MCAODC_19020 0.32 -1.7 657,446 + exoX MCAODC_19020 0.34 -3.3 657,458 - exoX MCAODC_19020 0.36 -1.0 657,551 + exoX MCAODC_19020 0.50 -2.0 657,559 + exoX MCAODC_19020 0.51 -0.0 657,569 + exoX MCAODC_19020 0.53 -0.5 657,571 + exoX MCAODC_19020 0.53 +0.8 657,571 + exoX MCAODC_19020 0.53 -0.6 657,629 + exoX MCAODC_19020 0.62 -0.4 657,629 + exoX MCAODC_19020 0.62 -1.6 657,629 + exoX MCAODC_19020 0.62 +0.7 657,638 + exoX MCAODC_19020 0.63 -0.9 657,639 - exoX MCAODC_19020 0.63 -0.2 657,639 - exoX MCAODC_19020 0.63 -2.6 657,667 + exoX MCAODC_19020 0.68 -0.3 657,753 - exoX MCAODC_19020 0.81 +1.4 657,753 - exoX MCAODC_19020 0.81 -0.9 657,797 + exoX MCAODC_19020 0.87 -3.1 657,878 + -1.6 657,961 - +0.2 658,012 + +0.5 658,013 - -3.0 658,093 + ptrB MCAODC_19025 0.10 +1.4 658,121 + ptrB MCAODC_19025 0.12 +1.6 658,167 - ptrB MCAODC_19025 0.14 +1.0 658,167 - ptrB MCAODC_19025 0.14 +0.5 658,172 + ptrB MCAODC_19025 0.14 +1.3 658,173 - ptrB MCAODC_19025 0.14 +0.7 658,173 - ptrB MCAODC_19025 0.14 -0.2 658,252 + ptrB MCAODC_19025 0.18 -0.9 658,294 + ptrB MCAODC_19025 0.20 -1.2 658,429 - ptrB MCAODC_19025 0.27 -1.2 658,508 + ptrB MCAODC_19025 0.31 -2.1 658,526 - ptrB MCAODC_19025 0.31 +1.4 658,563 + ptrB MCAODC_19025 0.33 +0.1 658,563 + ptrB MCAODC_19025 0.33 -0.5 658,584 - ptrB MCAODC_19025 0.34 -1.1 658,589 + ptrB MCAODC_19025 0.35 -0.4 658,590 - ptrB MCAODC_19025 0.35 -0.1 658,860 - ptrB MCAODC_19025 0.48 +1.0 658,860 - ptrB MCAODC_19025 0.48 -3.5 659,051 + ptrB MCAODC_19025 0.57 -1.2 659,053 + ptrB MCAODC_19025 0.57 -0.7 659,227 + ptrB MCAODC_19025 0.66 -3.0 659,227 + ptrB MCAODC_19025 0.66 +0.8 659,227 + ptrB MCAODC_19025 0.66 +2.3 659,228 - ptrB MCAODC_19025 0.66 -0.9 659,228 - ptrB MCAODC_19025 0.66 -0.2 659,231 + ptrB MCAODC_19025 0.66 +1.6 659,250 + ptrB MCAODC_19025 0.67 -0.7 659,251 - ptrB MCAODC_19025 0.67 -0.1 659,268 - ptrB MCAODC_19025 0.67 -2.4 659,271 + ptrB MCAODC_19025 0.68 +2.6 659,375 + ptrB MCAODC_19025 0.73 -1.5 659,376 - ptrB MCAODC_19025 0.73 -0.1 659,379 - ptrB MCAODC_19025 0.73 -0.2 659,481 - ptrB MCAODC_19025 0.78 +0.5 659,568 + ptrB MCAODC_19025 0.82 +0.8 659,569 - ptrB MCAODC_19025 0.82 +0.9 659,645 + ptrB MCAODC_19025 0.86 +0.0 659,649 + ptrB MCAODC_19025 0.86 -0.4 659,649 + ptrB MCAODC_19025 0.86 -0.5 659,650 - ptrB MCAODC_19025 0.86 +0.2 659,676 + ptrB MCAODC_19025 0.87 +1.1 659,752 + +0.2 659,805 + -0.1 659,941 - +0.0 659,966 + -0.5 659,967 - -0.5 659,967 - +1.7 659,967 - -0.3 659,968 + +0.4 659,969 - -0.0 659,969 - -1.6 659,969 - +0.5 659,969 - -0.1 660,244 - yebE MCAODC_19030 0.15 -2.1 660,269 - yebE MCAODC_19030 0.19 +0.1 660,294 + yebE MCAODC_19030 0.22 +0.3 660,451 + yebE MCAODC_19030 0.46 -1.7 660,451 + yebE MCAODC_19030 0.46 +0.1 660,521 - yebE MCAODC_19030 0.57 -0.0 660,577 - yebE MCAODC_19030 0.65 -1.0 660,577 - yebE MCAODC_19030 0.65 -0.9 660,639 + yebE MCAODC_19030 0.75 -0.7 660,668 - yebE MCAODC_19030 0.79 +0.8 660,668 - yebE MCAODC_19030 0.79 -1.0 660,806 - -0.4 660,806 - -1.9 660,806 - -0.9 660,806 - -1.1 660,806 - -1.1 660,838 + -0.7 660,839 - -0.6 660,868 + -0.8 660,869 - +1.2
Or see this region's nucleotide sequence