Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cspE and yebO are separated by 824 nucleotides yebO and yobH are separated by 377 nucleotides yobH and kdgR are separated by 143 nucleotides
MCAODC_18910: cspE - transcription antiterminator/RNA stability regulator CspE, at 638,324 to 638,533
cspE
MCAODC_18915: yebO - Uncharacterized protein YebO, at 639,358 to 639,645
yebO
MCAODC_18920: yobH - Uncharacterized protein YobH, at 640,023 to 640,262
yobH
MCAODC_18925: kdgR - DNA-binding transcriptional regulator KdgR, at 640,406 to 641,197
kdgR
Position (kb) 639
640 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 638.442 kb on - strand, within cspE at 638.442 kb on - strand, within cspE at 638.473 kb on + strand, within cspE at 638.509 kb on + strand, within cspE at 638.510 kb on - strand, within cspE at 638.574 kb on - strand at 638.574 kb on - strand at 638.574 kb on - strand at 638.579 kb on - strand at 638.616 kb on + strand at 638.617 kb on - strand at 638.733 kb on - strand at 638.733 kb on - strand at 638.733 kb on - strand at 638.740 kb on + strand at 638.819 kb on + strand at 638.820 kb on - strand at 638.820 kb on - strand at 638.842 kb on - strand at 638.877 kb on - strand at 638.902 kb on + strand at 638.951 kb on - strand at 638.963 kb on - strand at 639.299 kb on - strand at 639.299 kb on - strand at 639.427 kb on - strand, within yebO at 639.427 kb on - strand, within yebO at 639.550 kb on - strand, within yebO at 639.596 kb on - strand, within yebO at 639.883 kb on - strand at 639.888 kb on - strand at 639.888 kb on - strand at 639.925 kb on + strand at 639.929 kb on + strand at 639.929 kb on + strand at 639.938 kb on - strand at 639.992 kb on + strand at 640.021 kb on + strand at 640.046 kb on + strand at 640.054 kb on + strand, within yobH at 640.069 kb on + strand, within yobH at 640.075 kb on + strand, within yobH at 640.076 kb on - strand, within yobH at 640.142 kb on + strand, within yobH at 640.146 kb on + strand, within yobH at 640.147 kb on - strand, within yobH at 640.147 kb on - strand, within yobH at 640.179 kb on + strand, within yobH at 640.260 kb on + strand at 640.307 kb on - strand at 640.308 kb on + strand at 640.326 kb on + strand at 640.398 kb on + strand at 640.399 kb on - strand at 640.477 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 638,442 - cspE MCAODC_18910 0.56 +0.5 638,442 - cspE MCAODC_18910 0.56 +0.8 638,473 + cspE MCAODC_18910 0.71 +0.6 638,509 + cspE MCAODC_18910 0.88 -0.3 638,510 - cspE MCAODC_18910 0.89 +0.7 638,574 - -1.8 638,574 - +0.6 638,574 - +1.2 638,579 - +1.2 638,616 + -0.6 638,617 - -0.1 638,733 - +0.2 638,733 - -1.2 638,733 - -0.1 638,740 + +1.2 638,819 + +0.2 638,820 - +0.3 638,820 - -1.4 638,842 - -3.1 638,877 - -0.1 638,902 + +0.2 638,951 - -1.2 638,963 - +1.0 639,299 - -3.1 639,299 - -0.1 639,427 - yebO MCAODC_18915 0.24 -0.6 639,427 - yebO MCAODC_18915 0.24 +0.8 639,550 - yebO MCAODC_18915 0.67 -0.3 639,596 - yebO MCAODC_18915 0.83 +5.4 639,883 - -3.1 639,888 - +0.5 639,888 - -1.8 639,925 + +0.0 639,929 + -1.6 639,929 + +1.2 639,938 - +0.5 639,992 + +1.3 640,021 + -0.8 640,046 + +0.1 640,054 + yobH MCAODC_18920 0.13 -0.5 640,069 + yobH MCAODC_18920 0.19 +0.4 640,075 + yobH MCAODC_18920 0.22 +0.7 640,076 - yobH MCAODC_18920 0.22 +1.1 640,142 + yobH MCAODC_18920 0.50 -0.1 640,146 + yobH MCAODC_18920 0.51 +1.2 640,147 - yobH MCAODC_18920 0.52 +0.6 640,147 - yobH MCAODC_18920 0.52 -0.4 640,179 + yobH MCAODC_18920 0.65 -3.7 640,260 + -0.7 640,307 - +1.7 640,308 + +1.1 640,326 + +0.0 640,398 + +0.6 640,399 - +2.3 640,477 - -1.6
Or see this region's nucleotide sequence