Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yoaB and yoaC are separated by 421 nucleotides yoaC and yoaH are separated by 119 nucleotides yoaH and pabB are separated by 73 nucleotides
MCAODC_18835: yoaB - RutC family protein YoaB, at 624,461 to 624,808
yoaB
MCAODC_18840: yoaC - Uncharacterized protein YoaC, at 625,230 to 625,529
yoaC
MCAODC_18845: yoaH - YoaH family protein, at 625,649 to 625,828
yoaH
MCAODC_18850: pabB - aminodeoxychorismate synthase component 1, at 625,902 to 627,263
pabB
Position (kb) 625
626 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 624.694 kb on + strand, within yoaB at 624.774 kb on - strand at 624.827 kb on - strand at 624.956 kb on - strand at 624.959 kb on + strand at 624.973 kb on + strand at 624.973 kb on + strand at 624.973 kb on + strand at 625.044 kb on - strand at 625.153 kb on - strand at 625.243 kb on + strand at 625.243 kb on + strand at 625.247 kb on + strand at 625.248 kb on - strand at 625.280 kb on - strand, within yoaC at 625.331 kb on + strand, within yoaC at 625.498 kb on - strand, within yoaC at 625.498 kb on - strand, within yoaC at 625.499 kb on + strand, within yoaC at 625.499 kb on + strand, within yoaC at 625.499 kb on + strand, within yoaC at 625.499 kb on + strand, within yoaC at 625.499 kb on + strand, within yoaC at 625.499 kb on + strand, within yoaC at 625.541 kb on - strand at 625.548 kb on + strand at 625.548 kb on + strand at 625.548 kb on + strand at 625.579 kb on - strand at 625.622 kb on - strand at 625.622 kb on - strand at 625.642 kb on + strand at 625.814 kb on + strand at 625.842 kb on + strand at 625.860 kb on + strand at 625.881 kb on + strand at 625.882 kb on - strand at 625.889 kb on - strand at 625.913 kb on - strand at 625.929 kb on - strand at 625.929 kb on - strand at 625.963 kb on - strand at 625.975 kb on + strand at 626.003 kb on - strand at 626.028 kb on + strand at 626.028 kb on + strand at 626.030 kb on + strand at 626.081 kb on - strand, within pabB at 626.286 kb on - strand, within pabB at 626.312 kb on + strand, within pabB at 626.312 kb on + strand, within pabB at 626.316 kb on + strand, within pabB at 626.352 kb on - strand, within pabB at 626.373 kb on - strand, within pabB at 626.463 kb on - strand, within pabB at 626.508 kb on + strand, within pabB at 626.509 kb on - strand, within pabB at 626.509 kb on - strand, within pabB at 626.565 kb on + strand, within pabB at 626.565 kb on + strand, within pabB at 626.566 kb on - strand, within pabB at 626.601 kb on - strand, within pabB at 626.694 kb on - strand, within pabB at 626.696 kb on + strand, within pabB at 626.697 kb on - strand, within pabB at 626.731 kb on + strand, within pabB at 626.827 kb on + strand, within pabB at 626.828 kb on - strand, within pabB
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 624,694 + yoaB MCAODC_18835 0.67 +0.8 624,774 - -0.9 624,827 - +1.1 624,956 - -0.6 624,959 + -1.8 624,973 + +1.4 624,973 + -0.4 624,973 + +2.2 625,044 - -1.1 625,153 - +1.2 625,243 + +2.3 625,243 + -3.5 625,247 + +0.3 625,248 - -0.3 625,280 - yoaC MCAODC_18840 0.17 -0.1 625,331 + yoaC MCAODC_18840 0.34 +0.5 625,498 - yoaC MCAODC_18840 0.89 -1.8 625,498 - yoaC MCAODC_18840 0.89 -0.5 625,499 + yoaC MCAODC_18840 0.90 -0.3 625,499 + yoaC MCAODC_18840 0.90 -0.5 625,499 + yoaC MCAODC_18840 0.90 -2.3 625,499 + yoaC MCAODC_18840 0.90 -3.3 625,499 + yoaC MCAODC_18840 0.90 -1.6 625,499 + yoaC MCAODC_18840 0.90 +0.6 625,541 - -0.4 625,548 + -2.8 625,548 + +0.1 625,548 + -1.8 625,579 - -1.1 625,622 - -0.9 625,622 - -1.8 625,642 + +0.7 625,814 + -0.2 625,842 + +1.3 625,860 + -1.7 625,881 + -0.0 625,882 - +0.8 625,889 - +0.1 625,913 - +0.6 625,929 - +0.5 625,929 - -1.0 625,963 - +0.5 625,975 + -1.4 626,003 - -0.4 626,028 + -0.5 626,028 + +1.3 626,030 + -1.3 626,081 - pabB MCAODC_18850 0.13 -2.4 626,286 - pabB MCAODC_18850 0.28 -2.6 626,312 + pabB MCAODC_18850 0.30 +0.9 626,312 + pabB MCAODC_18850 0.30 +0.9 626,316 + pabB MCAODC_18850 0.30 -1.7 626,352 - pabB MCAODC_18850 0.33 +0.4 626,373 - pabB MCAODC_18850 0.35 +2.1 626,463 - pabB MCAODC_18850 0.41 -0.6 626,508 + pabB MCAODC_18850 0.44 +2.6 626,509 - pabB MCAODC_18850 0.45 -0.8 626,509 - pabB MCAODC_18850 0.45 -1.3 626,565 + pabB MCAODC_18850 0.49 +0.5 626,565 + pabB MCAODC_18850 0.49 +1.1 626,566 - pabB MCAODC_18850 0.49 +1.1 626,601 - pabB MCAODC_18850 0.51 -1.3 626,694 - pabB MCAODC_18850 0.58 -1.5 626,696 + pabB MCAODC_18850 0.58 -2.0 626,697 - pabB MCAODC_18850 0.58 +0.2 626,731 + pabB MCAODC_18850 0.61 -0.4 626,827 + pabB MCAODC_18850 0.68 -0.6 626,828 - pabB MCAODC_18850 0.68 -0.2
Or see this region's nucleotide sequence