Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yeaY and tsaB are separated by 39 nucleotides tsaB and yoaA are separated by 57 nucleotides yoaA and yoaB are separated by 128 nucleotides yoaB and yoaC are separated by 421 nucleotides
MCAODC_18820: yeaY - Slp family lipoprotein YeaY, at 621,048 to 621,629
yeaY
MCAODC_18825: tsaB - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB, at 621,669 to 622,364
tsaB
MCAODC_18830: yoaA - putative ATP-dependent DNA helicase YoaA, at 622,422 to 624,332
yoaA
MCAODC_18835: yoaB - RutC family protein YoaB, at 624,461 to 624,808
yoaB
MCAODC_18840: yoaC - Uncharacterized protein YoaC, at 625,230 to 625,529
yoaC
Position (kb) 622
623
624
625 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 621.479 kb on - strand, within yeaY at 621.479 kb on - strand, within yeaY at 621.598 kb on - strand at 621.658 kb on - strand at 622.608 kb on - strand at 622.630 kb on - strand, within yoaA at 622.706 kb on + strand, within yoaA at 622.707 kb on - strand, within yoaA at 622.743 kb on - strand, within yoaA at 622.854 kb on + strand, within yoaA at 622.854 kb on + strand, within yoaA at 622.855 kb on - strand, within yoaA at 622.919 kb on + strand, within yoaA at 623.091 kb on + strand, within yoaA at 623.182 kb on - strand, within yoaA at 623.257 kb on + strand, within yoaA at 623.257 kb on + strand, within yoaA at 623.308 kb on + strand, within yoaA at 623.309 kb on - strand, within yoaA at 623.432 kb on + strand, within yoaA at 623.432 kb on + strand, within yoaA at 623.806 kb on + strand, within yoaA at 623.807 kb on - strand, within yoaA at 624.016 kb on + strand, within yoaA at 624.094 kb on + strand, within yoaA at 624.170 kb on - strand at 624.170 kb on - strand at 624.176 kb on - strand at 624.278 kb on + strand at 624.335 kb on + strand at 624.362 kb on - strand at 624.362 kb on - strand at 624.508 kb on - strand, within yoaB at 624.533 kb on + strand, within yoaB at 624.632 kb on - strand, within yoaB at 624.694 kb on + strand, within yoaB at 624.774 kb on - strand at 624.827 kb on - strand at 624.956 kb on - strand at 624.959 kb on + strand at 624.973 kb on + strand at 624.973 kb on + strand at 624.973 kb on + strand at 625.044 kb on - strand at 625.153 kb on - strand at 625.243 kb on + strand at 625.243 kb on + strand at 625.247 kb on + strand at 625.248 kb on - strand at 625.280 kb on - strand, within yoaC at 625.331 kb on + strand, within yoaC
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 621,479 - yeaY MCAODC_18820 0.74 -0.3 621,479 - yeaY MCAODC_18820 0.74 -0.4 621,598 - -0.3 621,658 - -0.4 622,608 - +0.6 622,630 - yoaA MCAODC_18830 0.11 +1.8 622,706 + yoaA MCAODC_18830 0.15 -2.6 622,707 - yoaA MCAODC_18830 0.15 -0.0 622,743 - yoaA MCAODC_18830 0.17 +0.4 622,854 + yoaA MCAODC_18830 0.23 -2.1 622,854 + yoaA MCAODC_18830 0.23 -0.5 622,855 - yoaA MCAODC_18830 0.23 -2.1 622,919 + yoaA MCAODC_18830 0.26 +0.6 623,091 + yoaA MCAODC_18830 0.35 -0.1 623,182 - yoaA MCAODC_18830 0.40 +0.0 623,257 + yoaA MCAODC_18830 0.44 +0.7 623,257 + yoaA MCAODC_18830 0.44 -0.0 623,308 + yoaA MCAODC_18830 0.46 +1.5 623,309 - yoaA MCAODC_18830 0.46 +0.3 623,432 + yoaA MCAODC_18830 0.53 +0.2 623,432 + yoaA MCAODC_18830 0.53 -1.6 623,806 + yoaA MCAODC_18830 0.72 -0.9 623,807 - yoaA MCAODC_18830 0.72 -1.8 624,016 + yoaA MCAODC_18830 0.83 +0.2 624,094 + yoaA MCAODC_18830 0.87 -1.9 624,170 - +0.5 624,170 - -0.2 624,176 - +2.5 624,278 + +1.1 624,335 + -0.7 624,362 - +0.5 624,362 - -0.7 624,508 - yoaB MCAODC_18835 0.14 +0.4 624,533 + yoaB MCAODC_18835 0.21 +1.2 624,632 - yoaB MCAODC_18835 0.49 +0.3 624,694 + yoaB MCAODC_18835 0.67 +0.8 624,774 - -0.9 624,827 - +1.1 624,956 - -0.6 624,959 + -1.8 624,973 + +1.4 624,973 + -0.4 624,973 + +2.2 625,044 - -1.1 625,153 - +1.2 625,243 + +2.3 625,243 + -3.5 625,247 + +0.3 625,248 - -0.3 625,280 - yoaC MCAODC_18840 0.17 -0.1 625,331 + yoaC MCAODC_18840 0.34 +0.5
Or see this region's nucleotide sequence