Strain Fitness in Escherichia coli ECRC101 around MCAODC_18795

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyeaV and yeaW are separated by 31 nucleotidesyeaW and yeaX are separated by 55 nucleotides MCAODC_18790: yeaV - BCCT family transporter YeaV, at 614,120 to 615,730 yeaV MCAODC_18795: yeaW - carnitine monooxygenase subunit YeaW, at 615,762 to 616,886 yeaW MCAODC_18800: yeaX - carnitine monooxygenase subunit YeaX, at 616,942 to 617,907 yeaX Position (kb) 615 616 617Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 615.015 kb on + strand, within yeaVat 615.089 kb on + strand, within yeaVat 615.089 kb on + strand, within yeaVat 615.216 kb on - strand, within yeaVat 615.393 kb on - strand, within yeaVat 615.651 kb on - strandat 615.761 kb on + strandat 615.761 kb on + strandat 615.761 kb on + strandat 615.787 kb on + strandat 615.790 kb on + strandat 616.019 kb on + strand, within yeaWat 616.082 kb on + strand, within yeaWat 616.083 kb on - strand, within yeaWat 616.139 kb on + strand, within yeaWat 616.207 kb on - strand, within yeaWat 616.252 kb on + strand, within yeaWat 616.611 kb on + strand, within yeaWat 616.655 kb on + strand, within yeaWat 616.660 kb on - strand, within yeaWat 616.678 kb on + strand, within yeaWat 616.739 kb on - strand, within yeaWat 616.877 kb on + strandat 616.884 kb on + strandat 616.885 kb on - strandat 616.902 kb on + strandat 617.072 kb on + strand, within yeaXat 617.073 kb on - strand, within yeaXat 617.106 kb on + strand, within yeaXat 617.145 kb on + strand, within yeaXat 617.145 kb on + strand, within yeaXat 617.146 kb on - strand, within yeaXat 617.146 kb on - strand, within yeaXat 617.370 kb on - strand, within yeaXat 617.417 kb on + strand, within yeaXat 617.492 kb on + strand, within yeaXat 617.524 kb on + strand, within yeaXat 617.524 kb on + strand, within yeaXat 617.526 kb on + strand, within yeaXat 617.526 kb on + strand, within yeaXat 617.526 kb on + strand, within yeaXat 617.646 kb on + strand, within yeaXat 617.700 kb on + strand, within yeaXat 617.722 kb on - strand, within yeaXat 617.724 kb on + strand, within yeaXat 617.747 kb on + strand, within yeaXat 617.747 kb on + strand, within yeaXat 617.747 kb on + strand, within yeaXat 617.818 kb on + strandat 617.818 kb on + strandat 617.853 kb on + strandat 617.853 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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615,015 + yeaV MCAODC_18790 0.56 -1.0
615,089 + yeaV MCAODC_18790 0.60 +0.1
615,089 + yeaV MCAODC_18790 0.60 -1.5
615,216 - yeaV MCAODC_18790 0.68 +0.1
615,393 - yeaV MCAODC_18790 0.79 +0.1
615,651 - -0.2
615,761 + -1.0
615,761 + +0.1
615,761 + -0.5
615,787 + +1.2
615,790 + -2.2
616,019 + yeaW MCAODC_18795 0.23 +1.3
616,082 + yeaW MCAODC_18795 0.28 -2.4
616,083 - yeaW MCAODC_18795 0.29 -1.3
616,139 + yeaW MCAODC_18795 0.34 +0.5
616,207 - yeaW MCAODC_18795 0.40 -0.5
616,252 + yeaW MCAODC_18795 0.44 -1.8
616,611 + yeaW MCAODC_18795 0.75 +2.1
616,655 + yeaW MCAODC_18795 0.79 -2.3
616,660 - yeaW MCAODC_18795 0.80 -2.7
616,678 + yeaW MCAODC_18795 0.81 +0.4
616,739 - yeaW MCAODC_18795 0.87 -1.5
616,877 + +0.1
616,884 + +1.7
616,885 - -0.4
616,902 + -0.9
617,072 + yeaX MCAODC_18800 0.13 +0.4
617,073 - yeaX MCAODC_18800 0.14 +0.4
617,106 + yeaX MCAODC_18800 0.17 +0.5
617,145 + yeaX MCAODC_18800 0.21 -1.6
617,145 + yeaX MCAODC_18800 0.21 +0.7
617,146 - yeaX MCAODC_18800 0.21 -0.7
617,146 - yeaX MCAODC_18800 0.21 +0.4
617,370 - yeaX MCAODC_18800 0.44 -2.0
617,417 + yeaX MCAODC_18800 0.49 +1.1
617,492 + yeaX MCAODC_18800 0.57 +1.3
617,524 + yeaX MCAODC_18800 0.60 -0.9
617,524 + yeaX MCAODC_18800 0.60 -0.7
617,526 + yeaX MCAODC_18800 0.60 -0.7
617,526 + yeaX MCAODC_18800 0.60 -0.6
617,526 + yeaX MCAODC_18800 0.60 +1.3
617,646 + yeaX MCAODC_18800 0.73 +1.7
617,700 + yeaX MCAODC_18800 0.78 -0.3
617,722 - yeaX MCAODC_18800 0.81 +0.1
617,724 + yeaX MCAODC_18800 0.81 +0.3
617,747 + yeaX MCAODC_18800 0.83 -2.1
617,747 + yeaX MCAODC_18800 0.83 -2.8
617,747 + yeaX MCAODC_18800 0.83 +0.1
617,818 + +0.0
617,818 + +2.4
617,853 + -0.9
617,853 + +0.0

Or see this region's nucleotide sequence