Strain Fitness in Escherichia coli ECRC101 around MCAODC_18125

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpykF and lpp are separated by 310 nucleotideslpp and ldtE are separated by 62 nucleotides MCAODC_18120: pykF - pyruvate kinase PykF, at 484,679 to 486,091 pykF MCAODC_18125: lpp - murein lipoprotein Lpp, at 486,402 to 486,638 lpp MCAODC_18130: ldtE - L,D-transpeptidase LdtE, at 486,701 to 487,705 ldtE Position (kb) 486 487Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 486.024 kb on + strandat 486.064 kb on + strandat 486.089 kb on + strandat 486.090 kb on - strandat 486.194 kb on - strandat 486.196 kb on - strandat 486.196 kb on - strandat 486.198 kb on - strandat 486.261 kb on - strandat 486.366 kb on + strandat 486.446 kb on + strand, within lppat 486.623 kb on + strandat 486.623 kb on + strandat 486.623 kb on + strandat 486.623 kb on + strandat 486.636 kb on + strandat 486.636 kb on + strandat 486.636 kb on + strandat 486.636 kb on + strandat 486.639 kb on + strandat 486.642 kb on + strandat 486.697 kb on - strandat 486.721 kb on + strandat 486.759 kb on - strandat 486.857 kb on + strand, within ldtEat 486.866 kb on - strand, within ldtEat 487.078 kb on + strand, within ldtEat 487.138 kb on - strand, within ldtEat 487.381 kb on - strand, within ldtEat 487.437 kb on - strand, within ldtEat 487.439 kb on + strand, within ldtEat 487.440 kb on - strand, within ldtEat 487.440 kb on - strand, within ldtEat 487.499 kb on - strand, within ldtEat 487.581 kb on + strand, within ldtEat 487.582 kb on - strand, within ldtEat 487.582 kb on - strand, within ldtEat 487.582 kb on - strand, within ldtE

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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486,024 + +0.2
486,064 + -0.9
486,089 + -0.3
486,090 - +2.7
486,194 - -2.1
486,196 - +1.2
486,196 - +0.7
486,198 - -0.8
486,261 - +0.3
486,366 + -2.9
486,446 + lpp MCAODC_18125 0.19 -1.3
486,623 + +0.2
486,623 + +0.2
486,623 + -0.1
486,623 + -0.6
486,636 + -1.8
486,636 + +0.5
486,636 + +0.2
486,636 + -1.4
486,639 + +0.5
486,642 + -0.2
486,697 - -1.5
486,721 + -2.1
486,759 - +0.9
486,857 + ldtE MCAODC_18130 0.16 -0.1
486,866 - ldtE MCAODC_18130 0.16 +1.5
487,078 + ldtE MCAODC_18130 0.38 -1.0
487,138 - ldtE MCAODC_18130 0.43 +2.4
487,381 - ldtE MCAODC_18130 0.68 +0.7
487,437 - ldtE MCAODC_18130 0.73 -0.5
487,439 + ldtE MCAODC_18130 0.73 -2.9
487,440 - ldtE MCAODC_18130 0.74 +1.4
487,440 - ldtE MCAODC_18130 0.74 -2.2
487,499 - ldtE MCAODC_18130 0.79 -2.3
487,581 + ldtE MCAODC_18130 0.88 -0.2
487,582 - ldtE MCAODC_18130 0.88 +0.7
487,582 - ldtE MCAODC_18130 0.88 -0.2
487,582 - ldtE MCAODC_18130 0.88 -0.7

Or see this region's nucleotide sequence