Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydgA and MCAODC_17780 are separated by 44 nucleotides MCAODC_17780 and uidC are separated by 14 nucleotides uidC and uidB are separated by 38 nucleotides
MCAODC_17775: ydgA - Protein YdgA, at 418,922 to 420,430
ydgA
MCAODC_17780: MCAODC_17780 - Putative outer membrane porin protein, at 420,475 to 420,696
_17780
MCAODC_17785: uidC - glucuronide uptake porin UidC, at 420,711 to 421,739
uidC
MCAODC_17790: uidB - glucuronide transporter, at 421,778 to 423,151
uidB
Position (kb) 420
421
422 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 419.754 kb on - strand, within ydgA at 419.760 kb on + strand, within ydgA at 419.992 kb on + strand, within ydgA at 420.105 kb on + strand, within ydgA at 420.293 kb on - strand at 420.316 kb on + strand at 420.316 kb on + strand at 420.316 kb on + strand at 420.316 kb on + strand at 420.316 kb on + strand at 420.316 kb on + strand at 420.317 kb on - strand at 420.373 kb on + strand at 420.373 kb on + strand at 420.393 kb on + strand at 420.393 kb on + strand at 420.502 kb on - strand, within MCAODC_17780 at 420.522 kb on - strand, within MCAODC_17780 at 420.544 kb on - strand, within MCAODC_17780 at 420.637 kb on + strand, within MCAODC_17780 at 420.638 kb on - strand, within MCAODC_17780 at 420.638 kb on - strand, within MCAODC_17780 at 420.717 kb on + strand at 420.868 kb on - strand, within uidC at 420.936 kb on - strand, within uidC at 420.936 kb on - strand, within uidC at 420.995 kb on - strand, within uidC at 421.028 kb on + strand, within uidC at 421.160 kb on - strand, within uidC at 421.292 kb on + strand, within uidC at 421.293 kb on - strand, within uidC at 421.293 kb on - strand, within uidC at 421.333 kb on - strand, within uidC at 421.980 kb on + strand, within uidB at 422.391 kb on + strand, within uidB at 422.392 kb on - strand, within uidB at 422.458 kb on + strand, within uidB
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 419,754 - ydgA MCAODC_17775 0.55 -0.9 419,760 + ydgA MCAODC_17775 0.56 -1.1 419,992 + ydgA MCAODC_17775 0.71 +0.8 420,105 + ydgA MCAODC_17775 0.78 +0.1 420,293 - +0.8 420,316 + -0.7 420,316 + +0.5 420,316 + -0.2 420,316 + +0.8 420,316 + -1.7 420,316 + -0.5 420,317 - +0.3 420,373 + -0.6 420,373 + +0.5 420,393 + -1.6 420,393 + +0.9 420,502 - MCAODC_17780 0.12 +0.8 420,522 - MCAODC_17780 0.21 +0.4 420,544 - MCAODC_17780 0.31 +0.7 420,637 + MCAODC_17780 0.73 -2.1 420,638 - MCAODC_17780 0.73 +0.9 420,638 - MCAODC_17780 0.73 -1.1 420,717 + -2.9 420,868 - uidC MCAODC_17785 0.15 +3.1 420,936 - uidC MCAODC_17785 0.22 +0.8 420,936 - uidC MCAODC_17785 0.22 -0.2 420,995 - uidC MCAODC_17785 0.28 -0.7 421,028 + uidC MCAODC_17785 0.31 -0.6 421,160 - uidC MCAODC_17785 0.44 -0.7 421,292 + uidC MCAODC_17785 0.56 -2.4 421,293 - uidC MCAODC_17785 0.57 -0.8 421,293 - uidC MCAODC_17785 0.57 +2.4 421,333 - uidC MCAODC_17785 0.60 +0.4 421,980 + uidB MCAODC_17790 0.15 +2.6 422,391 + uidB MCAODC_17790 0.45 -0.8 422,392 - uidB MCAODC_17790 0.45 +1.8 422,458 + uidB MCAODC_17790 0.49 -0.4
Or see this region's nucleotide sequence