Strain Fitness in Escherichia coli ECRC101 around MCAODC_17715

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttqsA and pntB are separated by 24 nucleotidespntB and pntA are separated by 10 nucleotides MCAODC_17710: tqsA - AI-2 transporter TqsA, at 402,983 to 404,017 tqsA MCAODC_17715: pntB - Re/Si-specific NAD(P)(+) transhydrogenase subunit beta, at 404,042 to 405,430 pntB MCAODC_17720: pntA - Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha, at 405,441 to 406,973 pntA Position (kb) 404 405 406Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 403.362 kb on - strand, within tqsAat 403.362 kb on - strand, within tqsAat 403.418 kb on - strand, within tqsAat 403.462 kb on + strand, within tqsAat 403.568 kb on + strand, within tqsAat 403.685 kb on + strand, within tqsAat 403.685 kb on + strand, within tqsAat 403.697 kb on - strand, within tqsAat 403.737 kb on + strand, within tqsAat 403.747 kb on + strand, within tqsAat 403.758 kb on - strand, within tqsAat 403.785 kb on - strand, within tqsAat 403.866 kb on + strand, within tqsAat 404.008 kb on + strandat 404.140 kb on - strandat 404.207 kb on - strand, within pntBat 404.207 kb on - strand, within pntBat 404.249 kb on - strand, within pntBat 404.277 kb on - strand, within pntBat 404.340 kb on - strand, within pntBat 404.369 kb on - strand, within pntBat 404.369 kb on - strand, within pntBat 404.369 kb on - strand, within pntBat 404.369 kb on - strand, within pntBat 404.369 kb on - strand, within pntBat 404.488 kb on - strand, within pntBat 404.656 kb on + strand, within pntBat 404.832 kb on - strand, within pntBat 404.901 kb on - strand, within pntBat 404.901 kb on - strand, within pntBat 405.115 kb on - strand, within pntBat 405.403 kb on - strandat 405.403 kb on - strandat 405.403 kb on - strandat 405.417 kb on - strandat 405.430 kb on + strandat 405.431 kb on - strandat 405.431 kb on - strandat 405.431 kb on - strandat 405.498 kb on - strandat 405.513 kb on - strandat 405.531 kb on - strandat 405.623 kb on + strand, within pntAat 405.624 kb on - strand, within pntAat 405.656 kb on - strand, within pntAat 405.656 kb on - strand, within pntAat 405.876 kb on - strand, within pntAat 406.040 kb on - strand, within pntAat 406.094 kb on - strand, within pntAat 406.094 kb on - strand, within pntAat 406.177 kb on - strand, within pntAat 406.177 kb on - strand, within pntAat 406.326 kb on - strand, within pntA

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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403,362 - tqsA MCAODC_17710 0.37 -2.2
403,362 - tqsA MCAODC_17710 0.37 -1.6
403,418 - tqsA MCAODC_17710 0.42 +0.5
403,462 + tqsA MCAODC_17710 0.46 -2.0
403,568 + tqsA MCAODC_17710 0.57 -1.3
403,685 + tqsA MCAODC_17710 0.68 +1.1
403,685 + tqsA MCAODC_17710 0.68 +0.3
403,697 - tqsA MCAODC_17710 0.69 -1.4
403,737 + tqsA MCAODC_17710 0.73 +0.1
403,747 + tqsA MCAODC_17710 0.74 +1.1
403,758 - tqsA MCAODC_17710 0.75 +0.1
403,785 - tqsA MCAODC_17710 0.77 +0.5
403,866 + tqsA MCAODC_17710 0.85 +2.3
404,008 + +0.8
404,140 - -0.8
404,207 - pntB MCAODC_17715 0.12 -1.2
404,207 - pntB MCAODC_17715 0.12 +0.3
404,249 - pntB MCAODC_17715 0.15 -1.0
404,277 - pntB MCAODC_17715 0.17 -1.3
404,340 - pntB MCAODC_17715 0.21 -3.0
404,369 - pntB MCAODC_17715 0.24 -0.8
404,369 - pntB MCAODC_17715 0.24 +3.4
404,369 - pntB MCAODC_17715 0.24 -2.3
404,369 - pntB MCAODC_17715 0.24 -0.3
404,369 - pntB MCAODC_17715 0.24 -0.0
404,488 - pntB MCAODC_17715 0.32 -4.3
404,656 + pntB MCAODC_17715 0.44 -0.5
404,832 - pntB MCAODC_17715 0.57 -1.9
404,901 - pntB MCAODC_17715 0.62 +0.5
404,901 - pntB MCAODC_17715 0.62 -0.2
405,115 - pntB MCAODC_17715 0.77 -0.3
405,403 - -0.6
405,403 - -0.1
405,403 - +0.5
405,417 - -0.2
405,430 + -0.0
405,431 - -2.3
405,431 - -0.9
405,431 - -1.4
405,498 - +0.7
405,513 - +0.8
405,531 - +0.9
405,623 + pntA MCAODC_17720 0.12 +0.0
405,624 - pntA MCAODC_17720 0.12 -2.3
405,656 - pntA MCAODC_17720 0.14 -1.7
405,656 - pntA MCAODC_17720 0.14 +0.8
405,876 - pntA MCAODC_17720 0.28 -0.8
406,040 - pntA MCAODC_17720 0.39 +0.5
406,094 - pntA MCAODC_17720 0.43 -1.1
406,094 - pntA MCAODC_17720 0.43 +0.9
406,177 - pntA MCAODC_17720 0.48 +1.7
406,177 - pntA MCAODC_17720 0.48 +0.3
406,326 - pntA MCAODC_17720 0.58 +0.1

Or see this region's nucleotide sequence