Strain Fitness in Escherichia coli ECRC101 around MCAODC_17395

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmcrA and MCAODC_17390 are separated by 41 nucleotidesMCAODC_17390 and MCAODC_17395 are separated by 362 nucleotidesMCAODC_17395 and MCAODC_17400 are separated by 7 nucleotidesMCAODC_17400 and MCAODC_17405 overlap by 1 nucleotidesMCAODC_17405 and MCAODC_17410 are separated by 270 nucleotides MCAODC_17385: mcrA - HNH endonuclease, at 361,459 to 361,824 mcrA MCAODC_17390: MCAODC_17390 - DUF3950 domain-containing protein, at 361,866 to 362,093 _17390 MCAODC_17395: MCAODC_17395 - lysis protein, at 362,456 to 362,923 _17395 MCAODC_17400: MCAODC_17400 - hypothetical protein, at 362,931 to 363,077 _17400 MCAODC_17405: MCAODC_17405 - Phage antirepressor protein, at 363,077 to 363,646 _17405 MCAODC_17410: MCAODC_17410 - lysozyme, at 363,917 to 364,450 _17410 Position (kb) 362 363Strain fitness (log2 ratio) -1 0 1 2at 362.024 kb on - strand, within MCAODC_17390at 362.029 kb on - strand, within MCAODC_17390at 362.029 kb on - strand, within MCAODC_17390at 362.060 kb on + strand, within MCAODC_17390at 362.200 kb on + strandat 362.224 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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362,024 - MCAODC_17390 0.69 +0.9
362,029 - MCAODC_17390 0.71 -0.0
362,029 - MCAODC_17390 0.71 -1.2
362,060 + MCAODC_17390 0.85 +2.1
362,200 + +0.7
362,224 + -0.3

Or see this region's nucleotide sequence