Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yneK and yneK are separated by 78 nucleotides yneK and ydeA are separated by 150 nucleotides ydeA and marC are separated by 24 nucleotides marC and marR are separated by 211 nucleotides
MCAODC_16825: yneK - putative protein YneK, at 277,747 to 278,535
yneK
MCAODC_16830: yneK - putative protein YneK, at 278,614 to 278,862
yneK
MCAODC_16835: ydeA - L-arabinose MFS transporter, at 279,013 to 280,203
ydeA
MCAODC_16840: marC - NAAT family transporter MarC, at 280,228 to 280,893
marC
MCAODC_16845: marR - multiple antibiotic resistance transcriptional regulator MarR, at 281,105 to 281,539
marR
Position (kb) 279
280
281 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 278.525 kb on + strand at 278.688 kb on - strand, within yneK at 278.712 kb on + strand, within yneK at 278.874 kb on + strand at 278.875 kb on - strand at 279.181 kb on + strand, within ydeA at 279.182 kb on - strand, within ydeA at 279.195 kb on - strand, within ydeA at 279.216 kb on + strand, within ydeA at 279.216 kb on + strand, within ydeA at 279.217 kb on - strand, within ydeA at 279.217 kb on - strand, within ydeA at 279.217 kb on - strand, within ydeA at 279.277 kb on - strand, within ydeA at 279.290 kb on + strand, within ydeA at 279.464 kb on + strand, within ydeA at 279.547 kb on - strand, within ydeA at 279.547 kb on - strand, within ydeA at 279.655 kb on + strand, within ydeA at 279.697 kb on + strand, within ydeA at 279.698 kb on - strand, within ydeA at 279.704 kb on - strand, within ydeA at 279.705 kb on + strand, within ydeA at 279.705 kb on + strand, within ydeA at 279.705 kb on + strand, within ydeA at 279.767 kb on + strand, within ydeA at 279.846 kb on + strand, within ydeA at 279.908 kb on + strand, within ydeA at 279.966 kb on + strand, within ydeA at 280.038 kb on + strand, within ydeA at 280.071 kb on + strand, within ydeA at 280.111 kb on + strand at 280.145 kb on + strand at 280.158 kb on + strand at 280.160 kb on + strand at 280.270 kb on - strand at 280.285 kb on - strand at 280.285 kb on - strand at 280.351 kb on - strand, within marC at 280.370 kb on - strand, within marC at 280.476 kb on + strand, within marC at 280.476 kb on + strand, within marC at 280.510 kb on - strand, within marC at 280.693 kb on - strand, within marC at 280.774 kb on - strand, within marC at 280.774 kb on - strand, within marC at 280.813 kb on + strand, within marC at 280.814 kb on - strand, within marC at 280.944 kb on + strand at 281.101 kb on + strand at 281.154 kb on + strand, within marR at 281.155 kb on - strand, within marR at 281.167 kb on + strand, within marR at 281.198 kb on + strand, within marR at 281.198 kb on + strand, within marR
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 278,525 + +0.5 278,688 - yneK MCAODC_16830 0.30 -0.6 278,712 + yneK MCAODC_16830 0.39 -0.5 278,874 + -0.8 278,875 - -1.2 279,181 + ydeA MCAODC_16835 0.14 +1.0 279,182 - ydeA MCAODC_16835 0.14 +0.6 279,195 - ydeA MCAODC_16835 0.15 +1.8 279,216 + ydeA MCAODC_16835 0.17 -1.9 279,216 + ydeA MCAODC_16835 0.17 +1.2 279,217 - ydeA MCAODC_16835 0.17 +2.1 279,217 - ydeA MCAODC_16835 0.17 -0.3 279,217 - ydeA MCAODC_16835 0.17 +0.2 279,277 - ydeA MCAODC_16835 0.22 -1.1 279,290 + ydeA MCAODC_16835 0.23 -2.2 279,464 + ydeA MCAODC_16835 0.38 -0.0 279,547 - ydeA MCAODC_16835 0.45 +0.6 279,547 - ydeA MCAODC_16835 0.45 +0.5 279,655 + ydeA MCAODC_16835 0.54 -0.5 279,697 + ydeA MCAODC_16835 0.57 +1.3 279,698 - ydeA MCAODC_16835 0.58 -0.7 279,704 - ydeA MCAODC_16835 0.58 +0.3 279,705 + ydeA MCAODC_16835 0.58 +0.5 279,705 + ydeA MCAODC_16835 0.58 +0.3 279,705 + ydeA MCAODC_16835 0.58 -0.4 279,767 + ydeA MCAODC_16835 0.63 -3.3 279,846 + ydeA MCAODC_16835 0.70 +0.5 279,908 + ydeA MCAODC_16835 0.75 +1.0 279,966 + ydeA MCAODC_16835 0.80 -3.4 280,038 + ydeA MCAODC_16835 0.86 -0.0 280,071 + ydeA MCAODC_16835 0.89 -1.9 280,111 + +1.3 280,145 + -1.0 280,158 + -2.7 280,160 + +0.7 280,270 - +1.9 280,285 - +0.5 280,285 - -0.7 280,351 - marC MCAODC_16840 0.18 -1.2 280,370 - marC MCAODC_16840 0.21 +0.7 280,476 + marC MCAODC_16840 0.37 +0.8 280,476 + marC MCAODC_16840 0.37 -1.5 280,510 - marC MCAODC_16840 0.42 -1.1 280,693 - marC MCAODC_16840 0.70 -1.2 280,774 - marC MCAODC_16840 0.82 -0.1 280,774 - marC MCAODC_16840 0.82 +0.9 280,813 + marC MCAODC_16840 0.88 -2.2 280,814 - marC MCAODC_16840 0.88 +1.8 280,944 + -1.1 281,101 + -2.2 281,154 + marR MCAODC_16845 0.11 +0.1 281,155 - marR MCAODC_16845 0.11 +0.9 281,167 + marR MCAODC_16845 0.14 +0.8 281,198 + marR MCAODC_16845 0.21 -1.0 281,198 + marR MCAODC_16845 0.21 -2.2
Or see this region's nucleotide sequence