Strain Fitness in Escherichia coli ECRC101 around MCAODC_16825

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyneJ and yneK are separated by 77 nucleotidesyneK and yneK are separated by 78 nucleotidesyneK and ydeA are separated by 150 nucleotides MCAODC_16820: yneJ - Uncharacterized HTH-type transcriptional regulator YneJ, at 276,788 to 277,669 yneJ MCAODC_16825: yneK - putative protein YneK, at 277,747 to 278,535 yneK MCAODC_16830: yneK - putative protein YneK, at 278,614 to 278,862 yneK MCAODC_16835: ydeA - L-arabinose MFS transporter, at 279,013 to 280,203 ydeA Position (kb) 277 278 279Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 276.858 kb on + strandat 276.921 kb on + strand, within yneJat 276.957 kb on + strand, within yneJat 276.974 kb on - strand, within yneJat 277.175 kb on - strand, within yneJat 277.217 kb on - strand, within yneJat 277.238 kb on - strand, within yneJat 277.238 kb on - strand, within yneJat 277.336 kb on + strand, within yneJat 277.498 kb on + strand, within yneJat 277.622 kb on - strandat 277.709 kb on - strandat 277.733 kb on + strandat 277.778 kb on + strandat 278.525 kb on + strandat 278.688 kb on - strand, within yneKat 278.712 kb on + strand, within yneKat 278.874 kb on + strandat 278.875 kb on - strandat 279.181 kb on + strand, within ydeAat 279.182 kb on - strand, within ydeAat 279.195 kb on - strand, within ydeAat 279.216 kb on + strand, within ydeAat 279.216 kb on + strand, within ydeAat 279.217 kb on - strand, within ydeAat 279.217 kb on - strand, within ydeAat 279.217 kb on - strand, within ydeAat 279.277 kb on - strand, within ydeAat 279.290 kb on + strand, within ydeAat 279.464 kb on + strand, within ydeA

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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276,858 + -2.4
276,921 + yneJ MCAODC_16820 0.15 +0.3
276,957 + yneJ MCAODC_16820 0.19 -2.9
276,974 - yneJ MCAODC_16820 0.21 -3.0
277,175 - yneJ MCAODC_16820 0.44 -0.1
277,217 - yneJ MCAODC_16820 0.49 +0.5
277,238 - yneJ MCAODC_16820 0.51 +2.2
277,238 - yneJ MCAODC_16820 0.51 +0.4
277,336 + yneJ MCAODC_16820 0.62 +0.7
277,498 + yneJ MCAODC_16820 0.80 +0.0
277,622 - -3.0
277,709 - +0.0
277,733 + +0.1
277,778 + -1.1
278,525 + +0.5
278,688 - yneK MCAODC_16830 0.30 -0.6
278,712 + yneK MCAODC_16830 0.39 -0.5
278,874 + -0.8
278,875 - -1.2
279,181 + ydeA MCAODC_16835 0.14 +1.0
279,182 - ydeA MCAODC_16835 0.14 +0.6
279,195 - ydeA MCAODC_16835 0.15 +1.8
279,216 + ydeA MCAODC_16835 0.17 -1.9
279,216 + ydeA MCAODC_16835 0.17 +1.2
279,217 - ydeA MCAODC_16835 0.17 +2.1
279,217 - ydeA MCAODC_16835 0.17 -0.3
279,217 - ydeA MCAODC_16835 0.17 +0.2
279,277 - ydeA MCAODC_16835 0.22 -1.1
279,290 + ydeA MCAODC_16835 0.23 -2.2
279,464 + ydeA MCAODC_16835 0.38 -0.0

Or see this region's nucleotide sequence