Strain Fitness in Escherichia coli ECRC101 around MCAODC_16820

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsad and yneJ are separated by 100 nucleotidesyneJ and yneK are separated by 77 nucleotidesyneK and yneK are separated by 78 nucleotides MCAODC_16815: sad - succinate-semialdehyde dehydrogenase, at 275,299 to 276,687 sad MCAODC_16820: yneJ - Uncharacterized HTH-type transcriptional regulator YneJ, at 276,788 to 277,669 yneJ MCAODC_16825: yneK - putative protein YneK, at 277,747 to 278,535 yneK MCAODC_16830: yneK - putative protein YneK, at 278,614 to 278,862 yneK Position (kb) 276 277 278Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 275.866 kb on - strand, within sadat 275.965 kb on - strand, within sadat 276.132 kb on - strand, within sadat 276.133 kb on + strand, within sadat 276.134 kb on - strand, within sadat 276.134 kb on - strand, within sadat 276.325 kb on - strand, within sadat 276.352 kb on - strand, within sadat 276.539 kb on - strand, within sadat 276.539 kb on - strand, within sadat 276.539 kb on - strand, within sadat 276.540 kb on + strand, within sadat 276.858 kb on + strandat 276.921 kb on + strand, within yneJat 276.957 kb on + strand, within yneJat 276.974 kb on - strand, within yneJat 277.175 kb on - strand, within yneJat 277.217 kb on - strand, within yneJat 277.238 kb on - strand, within yneJat 277.238 kb on - strand, within yneJat 277.336 kb on + strand, within yneJat 277.498 kb on + strand, within yneJat 277.622 kb on - strandat 277.709 kb on - strandat 277.733 kb on + strandat 277.778 kb on + strandat 278.525 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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275,866 - sad MCAODC_16815 0.41 +0.1
275,965 - sad MCAODC_16815 0.48 -2.0
276,132 - sad MCAODC_16815 0.60 +0.3
276,133 + sad MCAODC_16815 0.60 -1.6
276,134 - sad MCAODC_16815 0.60 +0.0
276,134 - sad MCAODC_16815 0.60 +0.3
276,325 - sad MCAODC_16815 0.74 -0.4
276,352 - sad MCAODC_16815 0.76 -3.3
276,539 - sad MCAODC_16815 0.89 -0.5
276,539 - sad MCAODC_16815 0.89 -1.2
276,539 - sad MCAODC_16815 0.89 +1.4
276,540 + sad MCAODC_16815 0.89 +1.2
276,858 + -2.4
276,921 + yneJ MCAODC_16820 0.15 +0.3
276,957 + yneJ MCAODC_16820 0.19 -2.9
276,974 - yneJ MCAODC_16820 0.21 -3.0
277,175 - yneJ MCAODC_16820 0.44 -0.1
277,217 - yneJ MCAODC_16820 0.49 +0.5
277,238 - yneJ MCAODC_16820 0.51 +2.2
277,238 - yneJ MCAODC_16820 0.51 +0.4
277,336 + yneJ MCAODC_16820 0.62 +0.7
277,498 + yneJ MCAODC_16820 0.80 +0.0
277,622 - -3.0
277,709 - +0.0
277,733 + +0.1
277,778 + -1.1
278,525 + +0.5

Or see this region's nucleotide sequence