Strain Fitness in Escherichia coli ECRC101 around MCAODC_16785

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlsrF and lsrG are separated by 23 nucleotideslsrG and tam are separated by 56 nucleotidestam and yneE are separated by 3 nucleotides MCAODC_16775: lsrF - 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase, at 267,596 to 268,471 lsrF MCAODC_16780: lsrG - (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase, at 268,495 to 268,785 lsrG MCAODC_16785: tam - trans-aconitate 2-methyltransferase, at 268,842 to 269,600 tam MCAODC_16790: yneE - UPF0187 protein YneE, at 269,604 to 270,518 yneE Position (kb) 268 269 270Strain fitness (log2 ratio) -3 -2 -1 0 1at 267.846 kb on + strand, within lsrFat 267.846 kb on + strand, within lsrFat 267.850 kb on - strand, within lsrFat 267.949 kb on - strand, within lsrFat 268.061 kb on - strand, within lsrFat 268.151 kb on + strand, within lsrFat 268.212 kb on - strand, within lsrFat 268.442 kb on + strandat 268.451 kb on + strandat 268.469 kb on + strandat 268.469 kb on + strandat 268.583 kb on + strand, within lsrGat 268.583 kb on + strand, within lsrGat 268.660 kb on + strand, within lsrGat 268.662 kb on + strand, within lsrGat 268.864 kb on + strandat 268.865 kb on - strandat 268.942 kb on - strand, within tamat 269.198 kb on - strand, within tamat 269.335 kb on - strand, within tamat 269.391 kb on + strand, within tamat 269.551 kb on + strandat 270.136 kb on - strand, within yneEat 270.190 kb on - strand, within yneEat 270.303 kb on - strand, within yneEat 270.404 kb on + strand, within yneEat 270.432 kb on + strandat 270.435 kb on + strandat 270.435 kb on + strandat 270.551 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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267,846 + lsrF MCAODC_16775 0.29 +1.4
267,846 + lsrF MCAODC_16775 0.29 -0.4
267,850 - lsrF MCAODC_16775 0.29 +0.1
267,949 - lsrF MCAODC_16775 0.40 -2.1
268,061 - lsrF MCAODC_16775 0.53 -1.8
268,151 + lsrF MCAODC_16775 0.63 -3.3
268,212 - lsrF MCAODC_16775 0.70 -2.0
268,442 + +0.9
268,451 + -0.2
268,469 + +1.2
268,469 + +0.1
268,583 + lsrG MCAODC_16780 0.30 +1.2
268,583 + lsrG MCAODC_16780 0.30 -0.7
268,660 + lsrG MCAODC_16780 0.57 +1.6
268,662 + lsrG MCAODC_16780 0.57 -1.1
268,864 + -1.9
268,865 - +0.1
268,942 - tam MCAODC_16785 0.13 -0.3
269,198 - tam MCAODC_16785 0.47 +0.2
269,335 - tam MCAODC_16785 0.65 +0.5
269,391 + tam MCAODC_16785 0.72 -1.1
269,551 + -3.2
270,136 - yneE MCAODC_16790 0.58 -0.5
270,190 - yneE MCAODC_16790 0.64 -1.5
270,303 - yneE MCAODC_16790 0.76 -0.2
270,404 + yneE MCAODC_16790 0.87 -1.1
270,432 + -1.5
270,435 + -0.3
270,435 + -0.8
270,551 + -0.8

Or see this region's nucleotide sequence