Strain Fitness in Escherichia coli ECRC101 around MCAODC_16465

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntrhsA and MCAODC_16455 are separated by 11 nucleotidesMCAODC_16455 and MCAODC_16460 overlap by 1 nucleotidesMCAODC_16460 and ybfL are separated by 507 nucleotidesybfL and tnp-ISAs1 are separated by 99 nucleotides MCAODC_16450: rhsA - RHS element protein, at 183,477 to 187,679 rhsA MCAODC_16455: MCAODC_16455 - Type IV secretion protein Rhs, at 187,691 to 187,876 _16455 MCAODC_16460: MCAODC_16460 - DsORF-e4, at 187,876 to 188,085 _16460 MCAODC_16465: ybfL - ISAs1 family transposase, at 188,593 to 188,772 ybfL MCAODC_16470: tnp-ISAs1 - ISAs1 family transposase, at 188,872 to 189,762 tnp-ISAs1 Position (kb) 188 189Strain fitness (log2 ratio) -1 0 1at 187.788 kb on + strand, within MCAODC_16455

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
187,788 + MCAODC_16455 0.52 -1.5

Or see this region's nucleotide sequence