Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rhsA and MCAODC_16455 are separated by 11 nucleotides MCAODC_16455 and MCAODC_16460 overlap by 1 nucleotides MCAODC_16460 and ybfL are separated by 507 nucleotides ybfL and tnp-ISAs1 are separated by 99 nucleotides
MCAODC_16450: rhsA - RHS element protein, at 183,477 to 187,679
rhsA
MCAODC_16455: MCAODC_16455 - Type IV secretion protein Rhs, at 187,691 to 187,876
_16455
MCAODC_16460: MCAODC_16460 - DsORF-e4, at 187,876 to 188,085
_16460
MCAODC_16465: ybfL - ISAs1 family transposase, at 188,593 to 188,772
ybfL
MCAODC_16470: tnp-ISAs1 - ISAs1 family transposase, at 188,872 to 189,762
tnp-ISAs1
Position (kb) 187
188
189 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 187.034 kb on + strand, within rhsA at 187.110 kb on + strand, within rhsA at 187.114 kb on - strand, within rhsA at 187.132 kb on - strand, within rhsA at 187.132 kb on - strand, within rhsA at 187.153 kb on - strand, within rhsA at 187.153 kb on - strand, within rhsA at 187.153 kb on - strand, within rhsA at 187.155 kb on - strand, within rhsA at 187.155 kb on - strand, within rhsA at 187.157 kb on + strand, within rhsA at 187.157 kb on + strand, within rhsA at 187.158 kb on - strand, within rhsA at 187.197 kb on + strand, within rhsA at 187.267 kb on - strand at 187.339 kb on + strand at 187.400 kb on + strand at 187.410 kb on + strand at 187.410 kb on + strand at 187.490 kb on + strand at 187.556 kb on + strand at 187.577 kb on + strand at 187.577 kb on + strand at 187.788 kb on + strand, within MCAODC_16455
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 187,034 + rhsA MCAODC_16450 0.85 +1.1 187,110 + rhsA MCAODC_16450 0.86 -0.5 187,114 - rhsA MCAODC_16450 0.87 -1.2 187,132 - rhsA MCAODC_16450 0.87 -0.3 187,132 - rhsA MCAODC_16450 0.87 -1.0 187,153 - rhsA MCAODC_16450 0.87 +2.2 187,153 - rhsA MCAODC_16450 0.87 +1.4 187,153 - rhsA MCAODC_16450 0.87 +0.8 187,155 - rhsA MCAODC_16450 0.88 +0.1 187,155 - rhsA MCAODC_16450 0.88 +0.2 187,157 + rhsA MCAODC_16450 0.88 -1.1 187,157 + rhsA MCAODC_16450 0.88 -1.5 187,158 - rhsA MCAODC_16450 0.88 +0.6 187,197 + rhsA MCAODC_16450 0.89 -2.8 187,267 - +0.3 187,339 + +0.1 187,400 + -0.2 187,410 + +0.0 187,410 + +1.8 187,490 + +0.7 187,556 + -1.5 187,577 + -0.8 187,577 + -1.1 187,788 + MCAODC_16455 0.52 -1.5
Or see this region's nucleotide sequence